phytools (version 0.3-72.1)

ltt95: Creates a (1-$\alpha$)-percent CI for a set of LTTs

Description

This function computes LTT plots for a set of trees & plots a (1-$\alpha$)-percent CI by various methods.

Usage

ltt95(trees, alpha=0.05, log=FALSE, method=c("lineages","times"),
	mode=c("median","mean"), ...)

Arguments

trees

is an object of class "multiPhylo" containing a list of phylogenetic trees.

alpha

confidence level.

log

logical value indicating whether or not to plot on the log-scale.

method

plot the CI on the number of lineages given time ("lineages"); or on times given a number of lineages ("times").

mode

plot the median or mean LTT.

...

optional arguments. So far, res gives the number of time-steps (defaults to res=100.

Details

This function creates a plot and returns a matrix with the results.

See Also

ltt