combine27k450k

controlData

controlData<-

Cy3.N

Cy3<-

Cy5.N

Cy5<-

designIItoMandU

designItoMandU

detection

detection<-

diagnostics

getBarcodes

getProtocolData

IDATsToDFs

IDATtoDF

intensities.IB

intensities.M

intensities.OOB

intensities.OOB.allelic

intensities.U

intensitiesByChannel

lumiCSV

lumIDAT

mergeProbeDesigns

methylated.N

methylated.N<-

methylumi.bgcorr

methylumi.diagnostics

methylumiCSV

NChannelSetToMethyLumiSet

negctls

negctls.stderr

negnorm

normctls

plotNAs

plotNegOob

probeNAs

psummary

pval.detect

pval.detect<-

qc.probe.plot

sampleNAs

total.intensity

unmethylated.N

unmethylated.N<-

dataType

dataType<-

betas,RangedSummarizedExperiment-method

methylated,MethylSet-method

unmethylated,MethylSet-method

betas,GenomicMethylSet-method

betas,MethylSet-method

See the individual classes for details of methods.

methylumiGenerics

This package provides classes for holding and manipulating
	     Illumina methylation data.  Based on eSet, it can contain MIAME
	     information, sample information, feature information, and
	     multiple matrices of data.  An "intelligent" import function,
	     methylumiR can read the Illumina text files and create a
	     MethyLumiSet. methylumIDAT can directly read raw IDAT files from 
       HumanMethylation27 and HumanMethylation450 microarrays.  Normalization,
       background correction, and quality control features for GoldenGate,
       Infinium, and Infinium HD arrays are also included.

methylumiGenerics: Generics defined in methylumi

Description

Arguments