a MethyLumiM object includes Illumina Infinium methylation data
method
supported normalization methods or user provided function, whose input and output should be a intensity matrix (pool of methylated and unmethylated probe intensities)
separateColor
determine whether to separately process two color channels
verbose
a boolean to decide whether to print out some messages
overwriteBigMatrix
whether to overwrite the result to the BigMatrix data, only valid when the input data is BigMatrix-based
...
other parameters used by corresponding method
Value
Return an object (same class as input methyLumiM) with updated "methylated" and "unmethylated" data matrix after background level adjustment.