Usage
maQualityPlots(mrawObj, headerInfo = "", save = TRUE, dev = "png", col=NULL,
badspotfunction=NULL, controlId = c("ID", "Name"), DEBUG = FALSE, ...)
Arguments
mrawObj
marrayRaw or RGList object representing
the slides to be tested.
headerInfo
Text to be used as header in the diagnostic plot.
save
Logical. If 'TRUE', the plot is saved to a file.
dev
A "character" string naming the graphics device. This will
take arguments "png", "jpeg" and "ps" only. By default, dev is set
to "png".
col
Vector of colors to use to describe different
categories of spots.
badspotfunction
Function to use for bad spots on the array.
controlId
Character string. Name of the column of the gpr
file used to define controls (or provides the name of the probes).
DEBUG
If 'TRUE', debug statements are printed.