RRphylo (version 2.5.0)

makeL1: Matrix of branch lengths along a root-to-node path

Description

This function produces a \(n * n\) matrix, where n=number of internal branches. Each row represents the branch lengths aligned along a root-to-node path.

Usage

makeL1(tree)

Arguments

tree

a phylogenetic tree. The tree needs not to be ultrametric and fully dichotomous.

Value

The function returns a \(n * n\) matrix of branch lengths for all root-to-node paths (one per each node of the tree).

Examples

# NOT RUN {
data("DataApes")
DataApes$Tstage->Tstage

makeL1(tree=Tstage)
# }