"phylo"
, lists of trees of class "multiPhylo"
,
and DNA sequences of class "DNAbin"
. All options for the class
character may be used in the other methods.makeLabel(x, ...)
## S3 method for class 'character':
makeLabel(x, len = 99, space = "_", make.unique = TRUE,
illegal = "():;,[]", quote = FALSE, ...)
## S3 method for class 'phylo':
makeLabel(x, tips = TRUE, nodes = TRUE, ...)
## S3 method for class 'multiPhylo':
makeLabel(x, tips = TRUE, nodes = TRUE, ...)
## S3 method for class 'DNAbin':
makeLabel(x, ...)
TRUE
by
default.FALSE
by default.TRUE
by default.TRUE
by default.make.unique
does not work exactly in the same way
then the function of the same name: numbers are suffixed to all labels
that are identical (without separator). See the examples.If there are 10--99 identical labels, the labels returned are "xxx01", "xxx02", etc, or "xxx001", "xxx002", etc, if they are 100--999, and so on. The number of digits added preserves the option `len'.
The default for `len' makes labels short enough to be read by PhyML. Clustal accepts labels up to 30 character long.
makeNodeLabel
, make.unique
,
make.names
, abbreviate
,
mixedFontLabel
x <- rep("a", 3)
makeLabel(x)
make.unique(x) # <- from R's base
x <- rep("aaaaa", 2)
makeLabel(x, len = 3) # made unique and of length 3
makeLabel(x, len = 3, make.unique = FALSE)
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