When several OTUs, some can be monocen. and others holocen. Marks distance for monocen. are measured from cen. and for
holocen. from top or bottom depending on param origin. See vignettes.
bigdfOfMarks: Example data for mark position with column OTU
dfOfMarks: Example data for marks' position
dfOfMarks2: Marks' position including cen. marks
humMarkPos: human karyotype bands' (marks) positions, measured from Adler (1994)
allMarksSample: Example data for marks' position
dfAlloParentMarks: Example data for mark position of GISH of monocen.
traspaMarks: T. spathacea (Rhoeo) marks' positions, from Golczyk et al. (2005)
bigdfOfMarksdfOfMarks
dfOfMarks2
humMarkPos
allMarksSample
dfAlloParentMarks
traspaMarks
bigdfOfMarks a data.frame with columns:
OTU, species, mandatory if in dfChrSize
name of chromosome
name of mark
use p for short arm, q for long arm, and cen for centromeric
distance of mark to centromere (not for cen)
size of mark (not for cen)
An object of class data.frame with 4 rows and 5 columns.
An object of class data.frame with 6 rows and 5 columns.
An object of class data.frame with 395 rows and 5 columns.
An object of class data.frame with 43 rows and 6 columns.
An object of class data.frame with 15 rows and 4 columns.
An object of class data.frame with 18 rows and 7 columns.
Adler 1994. Idiogram Album. URL: Washington U.
Golczyk H, Hasterok R, Joachimiak AJ (2005) FISH-aimed karyotyping and characterization of Renner complexes in permanent heterozygote Rhoeo spathacea. Genome 48:145<U+2013>153.