Map function over all combinations.
Cluster functions helper: Read in your brew template file.
Call an arbitrary function on specified SSH workers.
Create an SSH cluster to execute jobs.
Function to get job resources in job function.
Construct a registry object.
Creates a job description.
Print and return R installation and other information for SSH workers.
Display the contents of a log file.
makeClusterFunctionsTorque
Create cluster functions for torque-based systems.
Cluster functions helper: Brew your template into a job description file.
Helper function to debug multicore mode.
Retrieve or show status information about jobs.
Add source dirs to registry.
cfHandleUnknownSubmitError
Cluster functions helper: Handle an unknown error during job submission.
Sweep obsolete files from the file system.
Find all results where a specific condition is true.
Manually query the BatchJobs database
Reduces via a binary function over a list adding jobs to a registry.
Add source files to registry.
Finds ids of jobs that match a query.
Helper function to debug SSH mode.
Cluster functions helper: Kill a batch job via OS command
Unload exported R objects.
Find jobs depending on computional state.
Get error messages of jobs.
Check job ids.
BatchJobs configuration.
Returns a list of BatchJobs configuration settings
Syncronize staged queries into the registry.
Get the physical location of job files on the hard disk.
ONLY FOR INTERNAL USAGE.
Get ids of jobs in registry.
Retrieve Job Parameters.
Get number of jobs in registry.
Get computational information of jobs.
makeClusterFunctionsSLURM
Create cluster functions for SLURM-based systems.
Create cluster functions for Sun Grid Engine systems.
Reduce results from result directory.
Function to get the resources that were submitted for some jobs.
Remove a registry object.
Load exported R data objects.
Sanitize a path
Kill some jobs on the batch system.
Load a specific configuration file.
Get jobs from registry by id.
Get log file paths for jobs.
ONLY FOR INTERNAL USAGE.
ONLY FOR INTERNAL USAGE.
Load a previously saved registry.
removeRegistrySourceFiles
Remove source files from registry.
Loads a specific result file.
Set packages for a registry.
Reset computational state of jobs.
Show information about available computational resources on cluster.
Create cluster functions for LSF systems.
Tests a job by running it with Rscript in a new process.
Loads result files for id vector.
Create a ClusterFuntions object.
Set and overwrite configuration settings
makeClusterFunctionsLocal
Create cluster functions for sequential execution on local host.
Sets the job function for already existing jobs.
ONLY FOR INTERNAL USAGE.
Wait for termination of jobs on the batch system.
Set job names.
Get job from registry by id.
makeClusterFunctionsInteractive
Create cluster functions for sequential execution in same session.
Grep log files for a pattern.
installPackagesOnSSHWorkers
Install packages on SSH workers.
Remove packages from registry.
makeClusterFunctionsMulticore
Use multiple cores on local Linux machine to spawn parallel jobs.
Remove packages from registry.
makeClusterFunctionsOpenLava
Create cluster functions for OpenLava systems.
Create SSH worker for SSH cluster functions.
Create a SubmitJobResult object.
Submit jobs or chunks of jobs to batch system via cluster function.
Source registry files
Maps a function over the results of a registry by using batchMap.
Export R object to be available on the slaves.
The BatchJobs package
Maps a function over lists or vectors, adding jobs to a registry.
Combination of makeRegistry, batchMap and submitJobs.
Add packages to registry.
applyJobFunction
ONLY FOR INTERNAL USAGE.
Reduces results via a binary function and adds jobs for this to a registry.