Maps a function over the results of a registry by using batchMap.
Add source files to registry.
Maps a function over lists or vectors, adding jobs to a registry.
Combination of makeRegistry, batchMap and submitJobs.
Export R object to be available on the slaves.
Add source dirs to registry.
Call an arbitrary function on specified SSH workers.
Add packages to registry.
The BatchJobs package
Reduces results via a binary function and adds jobs for this to a registry.
ONLY FOR INTERNAL USAGE.
ONLY FOR INTERNAL USAGE.
Reduces via a binary function over a list adding jobs to a registry.
Returns a list of BatchJobs configuration settings
Manually query the BatchJobs database
Find jobs depending on computional state.
Get number of jobs in registry.
Get the physical location of job files on the hard disk.
Check job ids.
Cluster functions helper: Brew your template into a job description file.
Cluster functions helper: Read in your brew template file.
BatchJobs configuration.
ONLY FOR INTERNAL USAGE.
Get job from registry by id.
Grep log files for a pattern.
Finds ids of jobs that match a query.
Get error messages of jobs.
Find all results where a specific condition is true.
Create an SSH cluster to execute jobs.
Load a specific configuration file.
Kill some jobs on the batch system.
Create cluster functions for LSF systems.
installPackagesOnSSHWorkers
Install packages on SSH workers.
applyJobFunction
ONLY FOR INTERNAL USAGE.
Unload exported R objects.
Get jobs from registry by id.
makeClusterFunctionsTorque
Create cluster functions for torque-based systems.
Source registry files
Reduce results from result directory.
Remove a registry object.
makeClusterFunctionsLocal
Create cluster functions for sequential execution on local host.
Submit jobs or chunks of jobs to batch system via cluster function.
Get ids of jobs in registry.
Sets the job function for already existing jobs.
Get computational information of jobs.
makeClusterFunctionsMulticore
Use multiple cores on local Linux machine to spawn parallel jobs.
Get log file paths for jobs.
Loads a specific result file.
Map function over all combinations.
Load a previously saved registry.
Load exported R data objects.
makeClusterFunctionsSLURM
Create cluster functions for SLURM-based systems.
Sweep obsolete files from the file system.
Remove packages from registry.
Remove packages from registry.
Create cluster functions for Sun Grid Engine systems.
Wait for termination of jobs on the batch system.
Syncronize staged queries into the registry.
Creates a job description.
Loads result files for id vector.
Reset computational state of jobs.
removeRegistrySourceFiles
Remove source files from registry.
makeClusterFunctionsOpenLava
Create cluster functions for OpenLava systems.
Set job names.
Retrieve or show status information about jobs.
Construct a registry object.
Display the contents of a log file.
cfHandleUnknownSubmitError
Cluster functions helper: Handle an unknown error during job submission.
Cluster functions helper: Kill a batch job via OS command
Set packages for a registry.
Helper function to debug SSH mode.
Helper function to debug multicore mode.
Sanitize a path
Set and overwrite configuration settings
Function to get the resources that were submitted for some jobs.
Retrieve Job Parameters.
makeClusterFunctionsInteractive
Create cluster functions for sequential execution in same session.
Function to get job resources in job function.
Create SSH worker for SSH cluster functions.
Print and return R installation and other information for SSH workers.
Show information about available computational resources on cluster.
Create a ClusterFuntions object.
Create a SubmitJobResult object.
ONLY FOR INTERNAL USAGE.
Tests a job by running it with Rscript in a new process.