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HSSVD (version 1.2)

Methylation: Methylation Data in cancer versus normal patients

Description

Description

Usage

data(Methylation)

Arguments

Format

A data frame with 384 observations on the following 1465 variables.
TargetID
a factor with levels
CHROMOSOME
a factor with levels
SYMBOL
a factor with levels
CPG_ISLAND
a logical vector
PRODUCT
a logical vector
ANNOTATION
a logical vector
SYNONYM
a logical vector
INPUT_SEQUENCE
a factor with levels
REFSEQ
a numeric vector
CG_NO
a factor with levels
DIST_TO_TSS
a logical vector
CPG_COORDINATE
a numeric vector
GID
a logical vector
ProbeID
a numeric vector
GENE_ID
a logical vector
Breast_N1.1034270290.AVG_Beta
a numeric vector
Breast_N1.1034270290.Signal.CY3
a numeric vector
Breast_N1.1034270290.Signal.CY5
a numeric vector
Breast_N1.1034270290.Avg_NBEADS
a numeric vector
Breast_N1.1034270290.BEAD_STDERR
a numeric vector
Breast_N10.1034269692.AVG_Beta
a numeric vector
Breast_N10.1034269692.Signal.CY3
a numeric vector
Breast_N10.1034269692.Signal.CY5
a numeric vector
Breast_N10.1034269692.Avg_NBEADS
a numeric vector
Breast_N10.1034269692.BEAD_STDERR
a numeric vector
Breast_N11.1034271163.AVG_Beta
a numeric vector
Breast_N11.1034271163.Signal.CY3
a numeric vector
Breast_N11.1034271163.Signal.CY5
a numeric vector
Breast_N11.1034271163.Avg_NBEADS
a numeric vector
Breast_N11.1034271163.BEAD_STDERR
a numeric vector
Breast_N12.1034271179.AVG_Beta
a numeric vector
Breast_N12.1034271179.Signal.CY3
a numeric vector
Breast_N12.1034271179.Signal.CY5
a numeric vector
Breast_N12.1034271179.Avg_NBEADS
a numeric vector
Breast_N12.1034271179.BEAD_STDERR
a numeric vector
Breast_N13.1034271188.AVG_Beta
a numeric vector
Breast_N13.1034271188.Signal.CY3
a numeric vector
Breast_N13.1034271188.Signal.CY5
a numeric vector
Breast_N13.1034271188.Avg_NBEADS
a numeric vector
Breast_N13.1034271188.BEAD_STDERR
a numeric vector
Breast_N14.1034271202.AVG_Beta
a numeric vector
Breast_N14.1034271202.Signal.CY3
a numeric vector
Breast_N14.1034271202.Signal.CY5
a numeric vector
Breast_N14.1034271202.Avg_NBEADS
a numeric vector
Breast_N14.1034271202.BEAD_STDERR
a numeric vector
Breast_N15.1034271214.AVG_Beta
a numeric vector
Breast_N15.1034271214.Signal.CY3
a numeric vector
Breast_N15.1034271214.Signal.CY5
a numeric vector
Breast_N15.1034271214.Avg_NBEADS
a numeric vector
Breast_N15.1034271214.BEAD_STDERR
a numeric vector
Breast_N16.1034271223.AVG_Beta
a numeric vector
Breast_N16.1034271223.Signal.CY3
a numeric vector
Breast_N16.1034271223.Signal.CY5
a numeric vector
Breast_N16.1034271223.Avg_NBEADS
a numeric vector
Breast_N16.1034271223.BEAD_STDERR
a numeric vector
Breast_N17.1034271241.AVG_Beta
a numeric vector
Breast_N17.1034271241.Signal.CY3
a numeric vector
Breast_N17.1034271241.Signal.CY5
a numeric vector
Breast_N17.1034271241.Avg_NBEADS
a numeric vector
Breast_N17.1034271241.BEAD_STDERR
a numeric vector
Breast_N18.1034247347.AVG_Beta
a numeric vector
Breast_N18.1034247347.Signal.CY3
a numeric vector
Breast_N18.1034247347.Signal.CY5
a numeric vector
Breast_N18.1034247347.Avg_NBEADS
a numeric vector
Breast_N18.1034247347.BEAD_STDERR
a numeric vector
Breast_N19.1034247365.AVG_Beta
a numeric vector
Breast_N19.1034247365.Signal.CY3
a numeric vector
Breast_N19.1034247365.Signal.CY5
a numeric vector
Breast_N19.1034247365.Avg_NBEADS
a numeric vector
Breast_N19.1034247365.BEAD_STDERR
a numeric vector
Breast_N2.1034270303.AVG_Beta
a numeric vector
Breast_N2.1034270303.Signal.CY3
a numeric vector
Breast_N2.1034270303.Signal.CY5
a numeric vector
Breast_N2.1034270303.Avg_NBEADS
a numeric vector
Breast_N2.1034270303.BEAD_STDERR
a numeric vector
Breast_N20.1034247368.AVG_Beta
a numeric vector
Breast_N20.1034247368.Signal.CY3
a numeric vector
Breast_N20.1034247368.Signal.CY5
a numeric vector
Breast_N20.1034247368.Avg_NBEADS
a numeric vector
Breast_N20.1034247368.BEAD_STDERR
a numeric vector
Breast_N21.1034247391.AVG_Beta
a numeric vector
Breast_N21.1034247391.Signal.CY3
a numeric vector
Breast_N21.1034247391.Signal.CY5
a numeric vector
Breast_N21.1034247391.Avg_NBEADS
a numeric vector
Breast_N21.1034247391.BEAD_STDERR
a numeric vector
Breast_N22.1034247380.AVG_Beta
a numeric vector
Breast_N22.1034247380.Signal.CY3
a numeric vector
Breast_N22.1034247380.Signal.CY5
a numeric vector
Breast_N22.1034247380.Avg_NBEADS
a numeric vector
Breast_N22.1034247380.BEAD_STDERR
a numeric vector
Breast_N23.1034247402.AVG_Beta
a numeric vector
Breast_N23.1034247402.Signal.CY3
a numeric vector
Breast_N23.1034247402.Signal.CY5
a numeric vector
Breast_N23.1034247402.Avg_NBEADS
a numeric vector
Breast_N23.1034247402.BEAD_STDERR
a numeric vector
Breast_N24.1034247409.AVG_Beta
a numeric vector
Breast_N24.1034247409.Signal.CY3
a numeric vector
Breast_N24.1034247409.Signal.CY5
a numeric vector
Breast_N24.1034247409.Avg_NBEADS
a numeric vector
Breast_N24.1034247409.BEAD_STDERR
a numeric vector
Breast_N25.1034247419.AVG_Beta
a numeric vector
Breast_N25.1034247419.Signal.CY3
a numeric vector
Breast_N25.1034247419.Signal.CY5
a numeric vector
Breast_N25.1034247419.Avg_NBEADS
a numeric vector
Breast_N25.1034247419.BEAD_STDERR
a numeric vector
Breast_N26.1034247426.AVG_Beta
a numeric vector
Breast_N26.1034247426.Signal.CY3
a numeric vector
Breast_N26.1034247426.Signal.CY5
a numeric vector
Breast_N26.1034247426.Avg_NBEADS
a numeric vector
Breast_N26.1034247426.BEAD_STDERR
a numeric vector
Breast_T3.1034270311.AVG_Beta
a numeric vector
Breast_T3.1034270311.Signal.CY3
a numeric vector
Breast_T3.1034270311.Signal.CY5
a numeric vector
Breast_T3.1034270311.Avg_NBEADS
a numeric vector
Breast_T3.1034270311.BEAD_STDERR
a numeric vector
Breast_T4.1034270328.AVG_Beta
a numeric vector
Breast_T4.1034270328.Signal.CY3
a numeric vector
Breast_T4.1034270328.Signal.CY5
a numeric vector
Breast_T4.1034270328.Avg_NBEADS
a numeric vector
Breast_T4.1034270328.BEAD_STDERR
a numeric vector
Breast_N5.1034270332.AVG_Beta
a numeric vector
Breast_N5.1034270332.Signal.CY3
a numeric vector
Breast_N5.1034270332.Signal.CY5
a numeric vector
Breast_N5.1034270332.Avg_NBEADS
a numeric vector
Breast_N5.1034270332.BEAD_STDERR
a numeric vector
Breast_N6.1034270355.AVG_Beta
a numeric vector
Breast_N6.1034270355.Signal.CY3
a numeric vector
Breast_N6.1034270355.Signal.CY5
a numeric vector
Breast_N6.1034270355.Avg_NBEADS
a numeric vector
Breast_N6.1034270355.BEAD_STDERR
a numeric vector
Breast_N7.1034270345.AVG_Beta
a numeric vector
Breast_N7.1034270345.Signal.CY3
a numeric vector
Breast_N7.1034270345.Signal.CY5
a numeric vector
Breast_N7.1034270345.Avg_NBEADS
a numeric vector
Breast_N7.1034270345.BEAD_STDERR
a numeric vector
Breast_N8.1034270366.AVG_Beta
a numeric vector
Breast_N8.1034270366.Signal.CY3
a numeric vector
Breast_N8.1034270366.Signal.CY5
a numeric vector
Breast_N8.1034270366.Avg_NBEADS
a numeric vector
Breast_N8.1034270366.BEAD_STDERR
a numeric vector
Breast_N9.1034270369.AVG_Beta
a numeric vector
Breast_N9.1034270369.Signal.CY3
a numeric vector
Breast_N9.1034270369.Signal.CY5
a numeric vector
Breast_N9.1034270369.Avg_NBEADS
a numeric vector
Breast_N9.1034270369.BEAD_STDERR
a numeric vector
Breast_T1.1034270289.AVG_Beta
a numeric vector
Breast_T1.1034270289.Signal.CY3
a numeric vector
Breast_T1.1034270289.Signal.CY5
a numeric vector
Breast_T1.1034270289.Avg_NBEADS
a numeric vector
Breast_T1.1034270289.BEAD_STDERR
a numeric vector
Breast_T10.1034271156.AVG_Beta
a numeric vector
Breast_T10.1034271156.Signal.CY3
a numeric vector
Breast_T10.1034271156.Signal.CY5
a numeric vector
Breast_T10.1034271156.Avg_NBEADS
a numeric vector
Breast_T10.1034271156.BEAD_STDERR
a numeric vector
Breast_T11.1034271164.AVG_Beta
a numeric vector
Breast_T11.1034271164.Signal.CY3
a numeric vector
Breast_T11.1034271164.Signal.CY5
a numeric vector
Breast_T11.1034271164.Avg_NBEADS
a numeric vector
Breast_T11.1034271164.BEAD_STDERR
a numeric vector
Breast_T12.1034271178.AVG_Beta
a numeric vector
Breast_T12.1034271178.Signal.CY3
a numeric vector
Breast_T12.1034271178.Signal.CY5
a numeric vector
Breast_T12.1034271178.Avg_NBEADS
a numeric vector
Breast_T12.1034271178.BEAD_STDERR
a numeric vector
Breast_T13.1034271190.AVG_Beta
a numeric vector
Breast_T13.1034271190.Signal.CY3
a numeric vector
Breast_T13.1034271190.Signal.CY5
a numeric vector
Breast_T13.1034271190.Avg_NBEADS
a numeric vector
Breast_T13.1034271190.BEAD_STDERR
a numeric vector
Breast_T14.1034271201.AVG_Beta
a numeric vector
Breast_T14.1034271201.Signal.CY3
a numeric vector
Breast_T14.1034271201.Signal.CY5
a numeric vector
Breast_T14.1034271201.Avg_NBEADS
a numeric vector
Breast_T14.1034271201.BEAD_STDERR
a numeric vector
Breast_T15.1034271215.AVG_Beta
a numeric vector
Breast_T15.1034271215.Signal.CY3
a numeric vector
Breast_T15.1034271215.Signal.CY5
a numeric vector
Breast_T15.1034271215.Avg_NBEADS
a numeric vector
Breast_T15.1034271215.BEAD_STDERR
a numeric vector
Breast_T16.1034271222.AVG_Beta
a numeric vector
Breast_T16.1034271222.Signal.CY3
a numeric vector
Breast_T16.1034271222.Signal.CY5
a numeric vector
Breast_T16.1034271222.Avg_NBEADS
a numeric vector
Breast_T16.1034271222.BEAD_STDERR
a numeric vector
Breast_T17.1034271242.AVG_Beta
a numeric vector
Breast_T17.1034271242.Signal.CY3
a numeric vector
Breast_T17.1034271242.Signal.CY5
a numeric vector
Breast_T17.1034271242.Avg_NBEADS
a numeric vector
Breast_T17.1034271242.BEAD_STDERR
a numeric vector
Breast_T18.1034247346.AVG_Beta
a numeric vector
Breast_T18.1034247346.Signal.CY3
a numeric vector
Breast_T18.1034247346.Signal.CY5
a numeric vector
Breast_T18.1034247346.Avg_NBEADS
a numeric vector
Breast_T18.1034247346.BEAD_STDERR
a numeric vector
Breast_T19.1034247367.AVG_Beta
a numeric vector
Breast_T19.1034247367.Signal.CY3
a numeric vector
Breast_T19.1034247367.Signal.CY5
a numeric vector
Breast_T19.1034247367.Avg_NBEADS
a numeric vector
Breast_T19.1034247367.BEAD_STDERR
a numeric vector
Breast_T2.1034270304.AVG_Beta
a numeric vector
Breast_T2.1034270304.Signal.CY3
a numeric vector
Breast_T2.1034270304.Signal.CY5
a numeric vector
Breast_T2.1034270304.Avg_NBEADS
a numeric vector
Breast_T2.1034270304.BEAD_STDERR
a numeric vector
Breast_T20.1034247369.AVG_Beta
a numeric vector
Breast_T20.1034247369.Signal.CY3
a numeric vector
Breast_T20.1034247369.Signal.CY5
a numeric vector
Breast_T20.1034247369.Avg_NBEADS
a numeric vector
Breast_T20.1034247369.BEAD_STDERR
a numeric vector
Breast_T21.1034247379.AVG_Beta
a numeric vector
Breast_T21.1034247379.Signal.CY3
a numeric vector
Breast_T21.1034247379.Signal.CY5
a numeric vector
Breast_T21.1034247379.Avg_NBEADS
a numeric vector
Breast_T21.1034247379.BEAD_STDERR
a numeric vector
Breast_T22.1034247381.AVG_Beta
a numeric vector
Breast_T22.1034247381.Signal.CY3
a numeric vector
Breast_T22.1034247381.Signal.CY5
a numeric vector
Breast_T22.1034247381.Avg_NBEADS
a numeric vector
Breast_T22.1034247381.BEAD_STDERR
a numeric vector
Breast_T23.1034247401.AVG_Beta
a numeric vector
Breast_T23.1034247401.Signal.CY3
a numeric vector
Breast_T23.1034247401.Signal.CY5
a numeric vector
Breast_T23.1034247401.Avg_NBEADS
a numeric vector
Breast_T23.1034247401.BEAD_STDERR
a numeric vector
Breast_T24.1034247410.AVG_Beta
a numeric vector
Breast_T24.1034247410.Signal.CY3
a numeric vector
Breast_T24.1034247410.Signal.CY5
a numeric vector
Breast_T24.1034247410.Avg_NBEADS
a numeric vector
Breast_T24.1034247410.BEAD_STDERR
a numeric vector
Breast_T25.1034247418.AVG_Beta
a numeric vector
Breast_T25.1034247418.Signal.CY3
a numeric vector
Breast_T25.1034247418.Signal.CY5
a numeric vector
Breast_T25.1034247418.Avg_NBEADS
a numeric vector
Breast_T25.1034247418.BEAD_STDERR
a numeric vector
Breast_T26.1034247425.AVG_Beta
a numeric vector
Breast_T26.1034247425.Signal.CY3
a numeric vector
Breast_T26.1034247425.Signal.CY5
a numeric vector
Breast_T26.1034247425.Avg_NBEADS
a numeric vector
Breast_T26.1034247425.BEAD_STDERR
a numeric vector
Breast_N3.1034270310.AVG_Beta
a numeric vector
Breast_N3.1034270310.Signal.CY3
a numeric vector
Breast_N3.1034270310.Signal.CY5
a numeric vector
Breast_N3.1034270310.Avg_NBEADS
a numeric vector
Breast_N3.1034270310.BEAD_STDERR
a numeric vector
Breast_N4.1034270329.AVG_Beta
a numeric vector
Breast_N4.1034270329.Signal.CY3
a numeric vector
Breast_N4.1034270329.Signal.CY5
a numeric vector
Breast_N4.1034270329.Avg_NBEADS
a numeric vector
Breast_N4.1034270329.BEAD_STDERR
a numeric vector
Breast_T5.1034270333.AVG_Beta
a numeric vector
Breast_T5.1034270333.Signal.CY3
a numeric vector
Breast_T5.1034270333.Signal.CY5
a numeric vector
Breast_T5.1034270333.Avg_NBEADS
a numeric vector
Breast_T5.1034270333.BEAD_STDERR
a numeric vector
Breast_T6.1034269657.AVG_Beta
a numeric vector
Breast_T6.1034269657.Signal.CY3
a numeric vector
Breast_T6.1034269657.Signal.CY5
a numeric vector
Breast_T6.1034269657.Avg_NBEADS
a numeric vector
Breast_T6.1034269657.BEAD_STDERR
a numeric vector
Colon_N1.1034270292.AVG_Beta
a numeric vector
Colon_N1.1034270292.Signal.CY3
a numeric vector
Colon_N1.1034270292.Signal.CY5
a numeric vector
Colon_N1.1034270292.Avg_NBEADS
a numeric vector
Colon_N1.1034270292.BEAD_STDERR
a numeric vector
Colon_N10.1034269701.AVG_Beta
a numeric vector
Colon_N10.1034269701.Signal.CY3
a numeric vector
Colon_N10.1034269701.Signal.CY5
a numeric vector
Colon_N10.1034269701.Avg_NBEADS
a numeric vector
Colon_N10.1034269701.BEAD_STDERR
a numeric vector
Colon_N11.1034271160.AVG_Beta
a numeric vector
Colon_N11.1034271160.Signal.CY3
a numeric vector
Colon_N11.1034271160.Signal.CY5
a numeric vector
Colon_N11.1034271160.Avg_NBEADS
a numeric vector
Colon_N11.1034271160.BEAD_STDERR
a numeric vector
Colon_N12.1034271181.AVG_Beta
a numeric vector
Colon_N12.1034271181.Signal.CY3
a numeric vector
Colon_N12.1034271181.Signal.CY5
a numeric vector
Colon_N12.1034271181.Avg_NBEADS
a numeric vector
Colon_N12.1034271181.BEAD_STDERR
a numeric vector
Colon_N14.1034271204.AVG_Beta
a numeric vector
Colon_N14.1034271204.Signal.CY3
a numeric vector
Colon_N14.1034271204.Signal.CY5
a numeric vector
Colon_N14.1034271204.Avg_NBEADS
a numeric vector
Colon_N14.1034271204.BEAD_STDERR
a numeric vector
Colon_N15.1034271212.AVG_Beta
a numeric vector
Colon_N15.1034271212.Signal.CY3
a numeric vector
Colon_N15.1034271212.Signal.CY5
a numeric vector
Colon_N15.1034271212.Avg_NBEADS
a numeric vector
Colon_N15.1034271212.BEAD_STDERR
a numeric vector
Colon_N16.1034271225.AVG_Beta
a numeric vector
Colon_N16.1034271225.Signal.CY3
a numeric vector
Colon_N16.1034271225.Signal.CY5
a numeric vector
Colon_N16.1034271225.Avg_NBEADS
a numeric vector
Colon_N16.1034271225.BEAD_STDERR
a numeric vector
Colon_N17.1034271239.AVG_Beta
a numeric vector
Colon_N17.1034271239.Signal.CY3
a numeric vector
Colon_N17.1034271239.Signal.CY5
a numeric vector
Colon_N17.1034271239.Avg_NBEADS
a numeric vector
Colon_N17.1034271239.BEAD_STDERR
a numeric vector
Colon_N18.1034247349.AVG_Beta
a numeric vector
Colon_N18.1034247349.Signal.CY3
a numeric vector
Colon_N18.1034247349.Signal.CY5
a numeric vector
Colon_N18.1034247349.Avg_NBEADS
a numeric vector
Colon_N18.1034247349.BEAD_STDERR
a numeric vector
Colon_N19.1034247363.AVG_Beta
a numeric vector
Colon_N19.1034247363.Signal.CY3
a numeric vector
Colon_N19.1034247363.Signal.CY5
a numeric vector
Colon_N19.1034247363.Avg_NBEADS
a numeric vector
Colon_N19.1034247363.BEAD_STDERR
a numeric vector
Colon_N2.1034270301.AVG_Beta
a numeric vector
Colon_N2.1034270301.Signal.CY3
a numeric vector
Colon_N2.1034270301.Signal.CY5
a numeric vector
Colon_N2.1034270301.Avg_NBEADS
a numeric vector
Colon_N2.1034270301.BEAD_STDERR
a numeric vector
Colon_N20.1034247371.AVG_Beta
a numeric vector
Colon_N20.1034247371.Signal.CY3
a numeric vector
Colon_N20.1034247371.Signal.CY5
a numeric vector
Colon_N20.1034247371.Avg_NBEADS
a numeric vector
Colon_N20.1034247371.BEAD_STDERR
a numeric vector
Colon_N21.1034247389.AVG_Beta
a numeric vector
Colon_N21.1034247389.Signal.CY3
a numeric vector
Colon_N21.1034247389.Signal.CY5
a numeric vector
Colon_N21.1034247389.Avg_NBEADS
a numeric vector
Colon_N21.1034247389.BEAD_STDERR
a numeric vector
Colon_N22.1034247393.AVG_Beta
a numeric vector
Colon_N22.1034247393.Signal.CY3
a numeric vector
Colon_N22.1034247393.Signal.CY5
a numeric vector
Colon_N22.1034247393.Avg_NBEADS
a numeric vector
Colon_N22.1034247393.BEAD_STDERR
a numeric vector
Colon_N23.1034247415.AVG_Beta
a numeric vector
Colon_N23.1034247415.Signal.CY3
a numeric vector
Colon_N23.1034247415.Signal.CY5
a numeric vector
Colon_N23.1034247415.Avg_NBEADS
a numeric vector
Colon_N23.1034247415.BEAD_STDERR
a numeric vector
Colon_N24.1034247407.AVG_Beta
a numeric vector
Colon_N24.1034247407.Signal.CY3
a numeric vector
Colon_N24.1034247407.Signal.CY5
a numeric vector
Colon_N24.1034247407.Avg_NBEADS
a numeric vector
Colon_N24.1034247407.BEAD_STDERR
a numeric vector
Colon_N25.1034247421.AVG_Beta
a numeric vector
Colon_N25.1034247421.Signal.CY3
a numeric vector
Colon_N25.1034247421.Signal.CY5
a numeric vector
Colon_N25.1034247421.Avg_NBEADS
a numeric vector
Colon_N25.1034247421.BEAD_STDERR
a numeric vector
Colon_N26.1034247438.AVG_Beta
a numeric vector
Colon_N26.1034247438.Signal.CY3
a numeric vector
Colon_N26.1034247438.Signal.CY5
a numeric vector
Colon_N26.1034247438.Avg_NBEADS
a numeric vector
Colon_N26.1034247438.BEAD_STDERR
a numeric vector
Colon_N27.1034247434.AVG_Beta
a numeric vector
Colon_N27.1034247434.Signal.CY3
a numeric vector
Colon_N27.1034247434.Signal.CY5
a numeric vector
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References

Hansen KD, et al. (2011) Increased methylation variation in epigenetic domains across cancer types. Nat Genet 43(8):768-775

Examples

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