mlgtResult: An S4 class to hold results from mlgt
Details
- projectName
- In which project does this
run belong
- runName
- Which run was this. An
identifier for the sequnece run
- markers
- A
list of named sequences.
- samples
- A vector
of sample names
- fTags
- A vector of named sequence
of MIDs used to barcode samples at the 5' end.
- rTags
- A vector of named sequence of MIDs used to
barcode samples at the 3' end. May be same as
fTags
- inputFastaFile
- The name of the file
containing sequences. Currently only fasta format is
supported. It is up to you to pre-filter the sequences.
- runSummaryTable
- A summary table with one row per
marker
- alleleDb
- A list of objects of class
variantMap. Contains all variants returned
by mlgt
- markerSampleList
- A list of
tables, one table per marker giving results for each
sample/MID