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phangorn (version 0.0-1)

Phylogenetic analysis in R

Description

Phylogenetic analysis in R (Estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, Distance methods & Hadamard conjugation)

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Version

Install

install.packages('phangorn')

Monthly Downloads

17,645

Version

0.0-1

License

GPL version 2 or newer

Maintainer

Klaus Schliep

Last Published

September 17th, 2024

Functions in phangorn (0.0-1)

phangorn-internal

Internal distpars functions
parsimony

Parsimony tree.
distanceHadamard

Distance Hadamard
upgma

UPGMA
dfactorial

Arithmetic Operators
hadamard

Hadamard Matrices and Fast Hadamard Multiplication
Laurasiatherian

Laurasiatherian data (AWCMEE)
treedist

Distances between trees
phyDat

Conversion amoung Sequence Formats
pml

Likelihood of a tree.
NJ

Neighbor-Joining