HH (version 3.1-14)

mmcisomeans: Functions used by mmcplot.

Description

Functions used by mmcplot.

Usage

mmcisomeans(mmc, type = "mca", xlim = NULL, ylim = NULL, ...,
            axis.right=2.2,
            ylab=paste(
              mmc$none$ylabel, "means",
              " | ",
              mmc$none$focus, "level"),
            ylab.right=NULL,
            xlab="contrast value",
            contrast.label=TRUE)
mmcmatch(mmc, type = "mca", xlim = NULL, ylim = NULL, ...,
         axis.right=2.2,
         ylab=NULL,
         ylab.right=NULL,
         xlab="contrast value",
         contrast.label=TRUE,
         xlim.match=(type != "none"))
mmcboth(mmc, type = "mca", h = c(0.7, 0.3), xlim = NULL, ylim = NULL, ...,
        ylab.right=NULL, MMCname="MMC", Tiebreakername="Tiebreaker")

Arguments

mmc

mmc object or other object as indicated by method.

type

One of c("mca", "lmat", "linfct", "none"). For the default "mca", an MMC plot is drawn of the pairwise contrasts. For "lmat" or "linfct", an MMC plot is drawn of the contrasts specified to <

h

h argument for resizePanels.

xlim, ylim, xlab, ylab, ylab.right

Standard xyplot arguments.

...

Other arguments, to be forwarded to methods.

axis.right

Value used internally for par.settings=list(layout.widths=list(axis.right=axis.right)). The user may need to set this in two circumstances. First, if the contrast names overflow the right edge of the plotting window, then use a large

contrast.label

Logical. The default TRUE means place the word contrasts at the bottom of the right axis under the tick labels. FALSE means don't place anything there.

MMCname, Tiebreakername

Panel names when mmcplot is used with style="both".

xlim.match

Logical. If TRUE, use xlim based on the contrasts in the mca component. If FALSE, use xlim based on the values of the estimates in the current component. If

Value

• A "trellis" object.

References

See mmc for the references.

See Also

mmc for the discussion of the MMC. mmcplot for the user calls that get executed by the functions documented here.

Examples

## these examples exercise all optional arguments
data(catalystm)
catalystm1.aov <- aov(concent ~ catalyst, data=catalystm)

catalystm.glht <-
   glht(catalystm1.aov, linfct = mcp(catalyst = "Tukey"))
confint(catalystm.glht)

plot(catalystm.glht)  ## this is the multcomp:::plot.glht

mmcplot(catalystm.glht)  ## mmcplot.glht sends its argument to HH:::as.multicomp.glht with
## the default arguments (estimate.sign = 1, order.contrasts = TRUE) unless overridden:
##
mmcplot(catalystm.glht, order.contrasts=FALSE, estimate.sign=0, main="B'")

catalystm.lmat <- cbind("AB-D" =c(1, 1, 0,-2),
                        "A-B"  =c(1,-1, 0, 0),
                        "ABD-C"=c(1, 1,-3, 1))
dimnames(catalystm.lmat)[[1]] <- levels(catalystm$catalyst)
catalystm.mmc <-
   mmc(catalystm1.aov,
       linfct = mcp(catalyst = "Tukey"),
       focus.lmat=catalystm.lmat)

mmcplot(catalystm.mmc, type="mca",  style="confint")
mmcplot(catalystm.mmc, type="lmat", style="confint")
mmcplot(catalystm.mmc, type="none", style="confint")
mmcplot(catalystm.mmc, type="none", style="confint", xlim.match=FALSE,
        main="xlim.match=FALSE is default for none confint")
mmcplot(catalystm.mmc, type="none", style="confint", xlim.match=TRUE, main="out of bounds")

mmcplot(catalystm.mmc$mca,  style="confint")
mmcplot(catalystm.mmc$lmat, style="confint")
mmcplot(catalystm.mmc$none, style="confint")

plot(catalystm.mmc) ## HH:::plot.mmc.multicomp method

mmcplot(catalystm.mmc)

mmcplot(catalystm.mmc)
mmcplot(catalystm.mmc, style="isomeans")
mmcplot(catalystm.mmc, style="confint")
mmcplot(catalystm.mmc, style="both")

mmcplot(catalystm.mmc, style="isomeans", type="mca")
mmcplot(catalystm.mmc, style="isomeans", type="lmat")
mmcplot(catalystm.mmc, style="isomeans", type="linfct")
mmcplot(catalystm.mmc, style="isomeans", type="none")
mmcplot(catalystm.mmc, style="isomeans", type="none", xlim.match=FALSE)

mmcplot(catalystm.mmc, style="confint",  type="mca")
mmcplot(catalystm.mmc, style="confint",  type="lmat")
mmcplot(catalystm.mmc, style="confint",  type="linfct")
mmcplot(catalystm.mmc, style="confint",  type="none")
mmcplot(catalystm.mmc, style="confint",  type="none", xlim.match=FALSE)

mmcplot(catalystm.mmc, style="both",     type="mca")
mmcplot(catalystm.mmc, style="both",     type="lmat")
mmcplot(catalystm.mmc, style="both",     type="linfct")
mmcplot(catalystm.mmc, style="both",     type="none")
mmcplot(catalystm.mmc, style="both",     type="none", xlim.match=FALSE)

mmcplot(catalystm.mmc$mca)
mmcplot(catalystm.mmc$mca$glht)
mmcplot(catalystm.mmc$none)
mmcplot(catalystm.mmc$none$glht)
mmcplot(catalystm.mmc$lmat)
mmcplot(catalystm.mmc$lmat$glht)

mmcplot(catalystm.mmc, type="none")
mmcplot(catalystm.mmc, type="none", xlim.match=FALSE)
mmcplot(catalystm.mmc$none)