pp.msms.data |
| data preprocessing |
gene.table |
| extract gene symbols from protein description |
count.stats |
| summaries by sample |
counts.pca |
| principal components analysis |
counts.hc |
| hierarchical clustering of samples |
norm.counts |
| normalization of spectral counts matrix |
counts.heatmap |
| experiment heatmap |
disp.estimates |
| dispersion analysis and plots |
filter.flags |
| flag informative features |
spc.barplots |
| sample sizes barplots |
spc.boxplots |
| samples SpC boxplots |
spc.densityplot |
| samples SpC density plots |
spc.scatterplot |
| scatterplot comparing two conditions |
batch.neutralize |
| batch effects correction |