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lme4 (version 1.1-10)

Linear Mixed-Effects Models using 'Eigen' and S4

Description

Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' "glue".

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Install

install.packages('lme4')

Monthly Downloads

389,866

Version

1.1-10

License

GPL (>= 2)

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Repository

https://github.com/lme4/lme4/ http://lme4.r-forge.r-project.org/

Maintainer

Ben Bolker

Last Published

October 6th, 2015

Functions in lme4 (1.1-10)

Extract or Get Generalized Components from a Fitted Mixed Effects Model

Verbal Aggression item responses

Determine random-effects expressions from a formula

Sparse Gaussian / Gauss-Hermite Quadrature grid

Univariate Gauss-Hermite quadrature rule

Contagious bovine pleuropneumonia

Paste strength by batch and cask

Assessing Convergence for Fitted Models

Generator object for the glmFamily class

glmFamily-class

Class "glmFamily" - a reference class for family

Breakage Angle of Chocolate Cakes

Class "rePos"

Compute Confidence Intervals for Parameters of a [ng]lmer Fit

Extract Variance and Correlation Components

Create Deviance Evaluation Function from Predictor and Response Module

Extract fixed-effects estimates

Make Random Effect Terms: Create Z, Lambda, Lind, etc.

NelderMead-class

Class "NelderMead" of Nelder-Mead optimizers and its Generator

residuals.merMod

residuals of merMod objects

add information to data based on a fitted model

University Lecture/Instructor Evaluations by Students at ETH

Manipulate a Nonlinear Model Formula

Fit List of lm Objects with a Common Model

Attempt to convert grouping variables to factors

Drop all possible single fixed-effect terms from a mixed effect model

Fitting GLMM's for Negative Binomial

Fitting Generalized Linear Mixed-Effects Models

Extract Residual Standard Deviation 'Sigma'

Dummy variables (experimental)

Omit terms separated by vertical bars in a formula

Modular Functions for Mixed Model Fits

Predictions from a model at new data values

Class "golden" and Generator for Golden Search Optimizer Class

Data on red grouse ticks from Elston et al. 2001

simulate.merMod

Simulate Responses From merMod Object

expandDoubleVerts

Expand terms with '||' notation into separate '|' terms

Nelder-Mead Optimization of Parameters, Possibly (Box) Constrained

Variation in penicillin testing

Getting p-values for fitted models

profile-methods

Profile method for merMod objects

"Sub[stitute] Bars"

Check characteristics of models

Linear, generalized linear, and nonlinear mixed models

Fit Linear Mixed-Effects Models

Reference Classes for Response Modules, "(lm|glm|nls|lmer)Resp"

Create an lmerResp, glmResp or nlsResp instance

Mixed-Effects Profile Plots (Regular / Density / Pairs)

Transform Profile to the variance scale

Make Variance and Correlation Matrices from theta

Yield of dyestuff by batch

Control of Mixed Model Fitting

Generator object for the merPredD class

Extract the deviance component list

hatvalues.merMod

Diagonal elements of the hat matrix

Extract the modes of the random effects

Convert between representations of (co-)variance structures

Reaction times in a sleep deprivation study

Create a 'merMod' Object

Generator object for the rePos (random-effects positions) class

Is f1 nested within f2?

glmerLaplaceHandle

Handle for glmerLaplace

troubleshooting

Troubleshooting

mkSimulateTemplate

Make templates suitable for guiding mixed model simulations

Number of Levels of a Factor or a "merMod" Model

Wrappers for additional optimizers

diagnostic plots for merMod fits

Fitting Nonlinear Mixed-Effects Models

Print and Summary Method Utilities for Mixed Effects

Class "lmList4" of 'lm' Objects on Common Model

Refit a Model by Maximum Likelihood Criterion

Refit a (merMod) Model with a Different Response

Model-based (Semi-)Parametric Bootstrap for Mixed Models

Class "merMod" of Fitted Mixed-Effect Models

Class "merPredD" - a Dense Predictor Reference Class

Arabidopsis clipping/fertilization data

Generator objects for the response classes

plots for lmList4 objects