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sdm (version 1.2-59)

Species Distribution Modelling

Description

An extensible framework for developing species distribution models using individual and community-based approaches, generate ensembles of models, evaluate the models, and predict species potential distributions in space and time. For more information, please check the following paper: Naimi, B., Araujo, M.B. (2016) .

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Version

Install

install.packages('sdm')

Monthly Downloads

1,025

Version

1.2-59

License

GPL (>= 3)

Maintainer

Babak Naimi

Last Published

July 13th, 2025

Functions in sdm (1.2-59)

Generate and plot Ecological Niche

read/write sdm* object from/to a file

install all packages that may be required by the package

Names of species

Ensemble Forecasting of SDMs

creating sdm Data object

sdm model prediction

sdmCorrelativeMethod-class

sdmCorrelativeMethod class

evaluate for accuracy

Generate and plot response curves

plot ROC curves

Fit and evaluate species distribution models

variable importance

Identifying/extracting the best threshold to convert probabilities to Presence/Absences

Subset models in a sdmModels object

sdmModels-classes

sdmModels classes

creating sdmSetting object

An S4 class representing sdm dataset

Converting probability of occurrence to Presence-absence

Principle Component Analysis

Get a data.frame with record id values (rID)

Generate background (pseudo-absence) records

Adapting sdm* objects in the new version

Combine (merge) two sdmModels into a single object

add a new method to the package

Extract by index

Indexing to extract records of a sdmdata object

get models' outputs

Get information/modelIDs relevant to fitted models in a sdmModels object

get or set spatial coordinates of species data

featuresFrame-class

featureFrame class

Area of Applicability

nicheSimilarity

Niche Similarity

Graphical User Interface