naiveBayes-class

naiveBayes

$,naiveBayes-method

$<-,naiveBayes-method


  An object of class <code>"naiveBayes"</code> represents the conditional a-posterior 
  probabilities of a categorical class variable given independent predictor 
  variables using the Bayes rule.


classes

This package uses the Naive Bayes classifier (from e1071)
to assign probability values to putative polyadenylation sites
(pA sites) based on training data from zebrafish. This will
allow the user to separate true, biologically relevant pA sites
from false, oligodT primed pA sites.

Sarah Sheppard

cleanUpdTSeq

This package classifies putative polyadenylation sites as true
or false/internally oligodT primed

naiveBayes-class function

Objects can be created by calls of the form 
  <code>new("naiveBayes", apriori,
                          tables,
                          levels,
                          call)</code>.

Objects from the Class

<dl>
    <dt><code>apriori</code></dt><dd>Class distribution for the dependent variable.</dd> <dt><code>tables</code></dt><dd>A list of tables, one for each predictor variable. 
    For each categorical variable a table giving, for each attribute level, 
    the conditional probabilities given the target class. For each numeric 
    variable, a table giving, for each target class, mean and standard 
    deviation of the (sub-)variable.</dd> </dl> 

Slots

<dl>
        <dt>$, $&lt;-</dt><dd>Get or set the slot of <code><a rd-options="" href="/link/naiveBayes?package=cleanUpdTSeq&version=1.10.2" data-mini-rdoc="cleanUpdTSeq::naiveBayes">naiveBayes</a></code></dd> </dl> 

Methods

An object of class <code>"naiveBayes"</code> represents the conditional a-posterior 
  probabilities of a categorical class variable given independent predictor 
  variables using the Bayes rule.

naiveBayes-class: Class `"naiveBayes"`

Description

Arguments

Objects from the Class

Slots

Methods