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vegan (version 1.6-1)
Community Ecology Package
Description
Ordination methods and other useful functions for community and vegetation ecologists.
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Install
install.packages('vegan')
Monthly Downloads
94,965
Version
1.6-1
License
GPL2
Maintainer
Jari Oksanen
Last Published
June 6th, 2025
Functions in vegan (1.6-1)
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dune
Vegetation and Environment in Dutch Dune Meadows.
procrustes
Procrustes Rotation of Two Configurations
plot.cca
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis
orditorp
Add Text or Points to Ordination Plots
deviance.cca
Statistics Resembling Deviance and AIC for Constrained Ordination
make.cepnames
Abbreviates a Botanical or Zoological Latin Name into an Eight-character Name
diversity
Ecological Diversity Indices and Rarefaction Species Richness
varespec
Vegetation and environment in lichen pastures
bioenv
Best Subset of Environmental Variables with Maximum (Rank) Correlation with Community Dissimilarities
specpool
Extrapolated Species Richness in a Species Pool
vegdist
Dissimilarity Indices for Community Ecologists
fisherfit
Fit Fisher's Logseries and Preston's Lognormal model to Abundance Data
rankindex
Compares Dissimilarity Indices for Gradient Detection
initMDS
Random Start and Axis Scaling for isoMDS
ordisurf
Smooths Variables and Plots Contours on Ordination.
specaccum
Species Accumulation Curves
read.cep
Reads a CEP (Canoco) data file
BCI
Barro Colorado Island Tree Counts
decorana
Detrended Correspondence Analysis and Basic Reciprocal Averaging
cca
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis
cca.object
Result Object from Constrained Ordination with cca, rda or capscale
anova.cca
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates
capscale
[Partial] Constrained Analysis of Principal Coordinates
ordiplot
Alternative plot and identify Functions for Ordination
vegemite
Prints a Compact, Ordered Vegetation Table
envfit
Fits an Environmental Vector or Factor onto an Ordination
linestack
Plots One-dimensional Labelled Diagrams without Overwriting Labels
decostand
Standardizaton Methods for Community Ecology
goodness.metaMDS
Goodness of Fit and Shepard Plot for Nonmetric Multidimensional Scaling
radfit
Rank -- Abundance or Dominance / Diversity Models
ordihull
Add Graphical Items to Ordination Diagrams
wascores
Weighted Averages Scores for Species
scores
Get Species or Site Scores from an Ordination
goodness.cca
Diagnostic Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
ordiplot3d
Three-Dimensional and Dynamic Ordination Graphics
distconnected
Connectedness and Minimum Spanning Tree for Dissimilarities
predict.cca
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
anosim
Analysis of Similarities
vegan-internal
Internal vegan functions
mantel
Mantel and Partial Mantel Tests for Dissimilarity Matrices
stepacross
Stepacross as Flexible Shortest Paths or Extended Dissimilarities
metaMDS
Nonmetric Multidimensional Scaling with Stable Solution from Random Starts, Axis Scaling and Species Scores
humpfit
No-interaction Model for Hump-backed Species Richness vs. Biomass