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vegan (version 1.6-9)
Community Ecology Package
Description
Ordination methods and other useful functions for community and vegetation ecologists.
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Install
install.packages('vegan')
Monthly Downloads
115,039
Version
1.6-9
License
GPL2
Maintainer
Jari Oksanen
Last Published
January 29th, 2025
Functions in vegan (1.6-9)
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fisherfit
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data
humpfit
No-interaction Model for Hump-backed Species Richness vs. Biomass
metaMDS
Nonmetric Multidimensional Scaling with Stable Solution from Random Starts, Axis Scaling and Species Scores
vegan-internal
Internal vegan functions
specpool
Extrapolated Species Richness in a Species Pool
rankindex
Compares Dissimilarity Indices for Gradient Detection
diversity
Ecological Diversity Indices and Rarefaction Species Richness
varespec
Vegetation and environment in lichen pastures
anova.cca
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates
ordiplot3d
Three-Dimensional and Dynamic Ordination Graphics
deviance.cca
Statistics Resembling Deviance and AIC for Constrained Ordination
envfit
Fits an Environmental Vector or Factor onto an Ordination
capscale
[Partial] Constrained Analysis of Principal Coordinates
anosim
Analysis of Similarities
procrustes
Procrustes Rotation of Two Configurations
radfit
Rank -- Abundance or Dominance / Diversity Models
cca
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis
ordisurf
Smooths Variables and Plots Contours on Ordination.
bioenv
Best Subset of Environmental Variables with Maximum (Rank) Correlation with Community Dissimilarities
read.cep
Reads a CEP (Canoco) data file
distconnected
Connectedness and Minimum Spanning Tree for Dissimilarities
ordihull
Add Graphical Items to Ordination Diagrams
specaccum
Species Accumulation Curves
dune
Vegetation and Environment in Dutch Dune Meadows.
predict.cca
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
goodness.metaMDS
Goodness of Fit and Shepard Plot for Nonmetric Multidimensional Scaling
plot.cca
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis
scores
Get Species or Site Scores from an Ordination
ordiplot
Alternative plot and identify Functions for Ordination
BCI
Barro Colorado Island Tree Counts
wascores
Weighted Averages Scores for Species
decorana
Detrended Correspondence Analysis and Basic Reciprocal Averaging
goondess.cca
Diagnostic Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
mantel
Mantel and Partial Mantel Tests for Dissimilarity Matrices
vegdist
Dissimilarity Indices for Community Ecologists
make.cepnames
Abbreviates a Botanical or Zoological Latin Name into an Eight-character Name
decostand
Standardizaton Methods for Community Ecology
vegemite
Prints a Compact, Ordered Vegetation Table
stepacross
Stepacross as Flexible Shortest Paths or Extended Dissimilarities