nodeplotdefault

(Optional). Numeric. Should be positive. The
  size parameter used to control the text size of taxa
  labels. Default is <code>2</code>. These are ggplot2 sizes.

size

(Optional). The horizontal justification of
  the node labels. Default is <code>-0.2</code>.

hjust


  Is not a labeling function itself, but returns one. The
  returned function is capable of adding whatever label is
  on a node. Note that the function that is returned has
  two completely different arguments to those listed here:
  the plot object already built by earlier steps in
  <code><a rd-options="" href="/link/plot_tree?package=phyloseq&version=1.12.2" data-mini-rdoc="phyloseq::plot_tree">plot_tree</a></code>, and the <code><a rd-options="" href="/link/data.frame?package=phyloseq&version=1.12.2" data-mini-rdoc="phyloseq::data.frame">data.frame</a></code>
  that contains the relevant plotting data for the nodes
  (especially <code>x, y, label</code>), respectively. See
  <code><a rd-options="" href="/link/nodeplotboot?package=phyloseq&version=1.12.2" data-mini-rdoc="phyloseq::nodeplotboot">nodeplotboot</a></code> for a more sophisticated
  example. The main purpose of this and
  <code><a rd-options="" href="/link/nodeplotboot?package=phyloseq&version=1.12.2" data-mini-rdoc="phyloseq::nodeplotboot">nodeplotboot</a></code> is to provide a useful default
  function generator for arbitrary and bootstrap node
  labels, respectively, and also to act as examples of
  functions that will successfully interact with
  <code><a rd-options="" href="/link/plot_tree?package=phyloseq&version=1.12.2" data-mini-rdoc="phyloseq::plot_tree">plot_tree</a></code> to add node labels to the
  graphic.


phyloseq provides a set of classes and tools
to facilitate the import, storage, analysis, and
graphical display of microbiome census data.

Paul J McMurdie

phyloseq

Handling and analysis of high-throughput microbiome
census data.

nodeplotdefault function


  Is not a labeling function itself, but returns one. The
  returned function is capable of adding whatever label is
  on a node. Note that the function that is returned has
  two completely different arguments to those listed here:
  the plot object already built by earlier steps in
  <code><a rd-options='' href='plot_tree'>plot_tree</a></code>, and the <code><a rd-options='' href='data.frame'>data.frame</a></code>
  that contains the relevant plotting data for the nodes
  (especially <code>x, y, label</code>), respectively. See
  <code><a rd-options='' href='nodeplotboot'>nodeplotboot</a></code> for a more sophisticated
  example. The main purpose of this and
  <code><a rd-options='' href='nodeplotboot'>nodeplotboot</a></code> is to provide a useful default
  function generator for arbitrary and bootstrap node
  labels, respectively, and also to act as examples of
  functions that will successfully interact with
  <code><a rd-options='' href='plot_tree'>plot_tree</a></code> to add node labels to the
  graphic.


nodeplotdefault: Generates a default node-label function

Description

Usage

Arguments

Value

See Also

Examples