This function takes the output from the npc
command in Perl Speaks
NONMEM (PsN) and makes a coverage plot. A coverage plot for the NPC looks
at different prediction intervals (PIs) for each data point and calculates
the total number of data points in the data set lying outside of these PIs.
The plot shows the relative amount of data points outside of their PI
compared to the expected amount at that PI. In addition a confidence
interval around these values are computed based on the simulated data.
npc.coverage(
npc.info = "npc_results.csv",
main = "Default",
main.sub = NULL,
main.sub.cex = 0.85,
...
)
A list of plots
Additional plot features
Specifies
whether confidence intervals (as lines, a shaded area or both) should be
added to the plot. NULL
means no CI.
Should the points outside the CI be marked in a different color to identify them.
Should there be a line
to mark the value of y=1? Possible values are TRUE
, FALSE
and
NULL
.
Should there be a line to mark the value of y=1?
Possible values are TRUE
, FALSE
and NULL
.
Line and area control. See plot
,
grid.polygon
and xyplot
for more
details.
What color should the area for the CI be? Defaults to "blue".
How
much transparency should the CI.area.col
have? Defaults to 0.3.
The width of the abline.
How should the abline look?
What should the line at the upper
edge of the CI look like when using CI = "both" or "lines"
?
What should the line at the upper edge of the CI look like when using
CI = "both" or "lines"
?
What
color should the line at the upper edge of the CI have when using CI =
"both" or "lines"
?
The line width of
the line at the upper edge of the CI when using CI = "both" or
"lines"
?
What should the line at
the lower edge of the CI look like when using CI = "both" or
"lines"
?
What should the line at the lower edge of the CI look
like when using CI = "both" or "lines"
?
What color should the line at the
lower edge of the CI have when using CI = "both" or "lines"
?
The line width of the line at the lower
edge of the CI when using CI = "both" or "lines"
?
The color of the observed values.
The type of point to use for the observed values.
The type of line to use for the observed values.
The combination of lines and points to use for the observed values.
The size of the points to use for the observed values.
The line width to use for the observed values.
The
color of the observed values that lie outside of the CI. Only used if
mark.outside.data = TRUE
.
The type of point
to use for the observed values that lie outside of the CI. Only used if
mark.outside.data = TRUE
.
The size of the
points of the observed values that lie outside of the CI. Only used if
mark.outside.data = TRUE
.
The line width of
the observed values that lie outside of the CI. Only used if
mark.outside.data = TRUE
.
read.npc.vpc.results
xpose.multiple.plot.default
xyplot
Other PsN functions:
boot.hist()
,
bootscm.import()
,
randtest.hist()
,
read.npc.vpc.results()
,
read.vpctab()
,
xpose.VPC.both()
,
xpose.VPC.categorical()
,
xpose.VPC()
,
xpose4-package
# NOT RUN {
# }
# NOT RUN {
library(xpose4)
npc.coverage()
## to read files in a directory different than the current working directory
npc.file <- "./another_directory/npc_results.csv"
npc.coverage(npc.info=npc.file)
# }
# NOT RUN {
# }
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