pomp (version 0.39-3)

pomp-methods: Methods of the "pomp" class

Description

Methods of the pomp class.

Usage

## S3 method for class 'pomp':
coef(object, pars, transform = FALSE, \dots)
## S3 method for class 'pomp':
coef(object, pars, transform = FALSE, \dots) <- value
## S3 method for class 'pomp':
obs(object, vars, \dots)
## S3 method for class 'pomp':
data.array(object, vars, \dots)
## S3 method for class 'pomp':
states(object, vars, \dots)
## S3 method for class 'pomp':
time(x, t0 = FALSE, \dots)
## S3 method for class 'pomp':
time(object, t0 = FALSE, \dots) <- value
## S3 method for class 'pomp':
timezero(object, \dots)
## S3 method for class 'pomp':
timezero(object, \dots) <- value
## S3 method for class 'pomp':
window(x, start, end, \dots)
## S3 method for class 'pomp':
show(object)
## S3 method for class 'pomp':
as(object, class)
## S3 method for class 'pomp':
as.data.frame(x, row.names, optional, \dots)
## S3 method for class 'pomp,data.frame':
coerce(from, to = "data.frame", strict = TRUE)
## S3 method for class 'pomp':
print(x, \dots)
## S3 method for class 'pomp':
plot(x, y, variables, panel = lines,
      nc = NULL, yax.flip = FALSE,
      mar = c(0, 5.1, 0, if (yax.flip) 5.1 else 2.1),
      oma = c(6, 0, 5, 0), axes = TRUE, ...)

Arguments

object, x

The pomp object.

pars

optional character; names of parameters to be retrieved or set.

vars

optional character; names of observed variables to be retrieved.

transform

optional logical; should the parameter transformations be applied?

value

numeric; values to be assigned.

t0

logical; if TRUE on a call to time, the zero time is prepended to the time vector; if TRUE on a call to time<-, the first element in value is taken to be the initial time.

start, end

start and end times of the window.

class

character; name of the class to which object should be coerced.

from, to

the classes between which coercion should be performed.

strict

ignored.

y

ignored.

variables

optional character; names of variables to plot.

panel

a function of prototype panel(x, col, bg, pch, type, ...) which gives the action to be carried out in each panel of the display.

nc

the number of columns to use. Defaults to 1 for up to 4 series, otherwise to 2.

yax.flip

logical; if TRUE, the y-axis (ticks and numbering) should flip from side 2 (left) to 4 (right) from series to series.

mar, oma

the 'par' settings for 'mar' and 'oma' to use. Modify with care!

axes

logical; indicates if x- and y- axes should be drawn.

row.names, optional

ignored.

...

Further arguments (either ignored or passed to underlying functions).

Details

[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

See Also

pomp, pomp-class, rprocess, dprocess, rmeasure, dmeasure, init.state, simulate