oligoType

Inherits: <a rd-options="" href="/link/rdmlBaseType?package=RDML&version=1.0" data-mini-rdoc="RDML::rdmlBaseType">rdmlBaseType</a>.

datasets

Imports real-time thermo cycler (qPCR) data from Real-time PCR
Data Markup Language (RDML) and transforms to the appropriate formats of
the 'qpcR' and 'chipPCR' packages. Contains a dendrogram visualization
for the structure of RDML object and GUI for RDML editing.

Konstantin A Blagodatskikh

RDML

Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format
Files

Konstantin A. Blagodatskikh

Stefan Roediger

Michal Burdukiewicz

Andrej-Nikolai Spiess

oligoType function

An <code><a rd-options="" href="/link/R6Class?package=RDML&version=1.0" data-mini-rdoc="RDML::R6Class">R6Class</a></code> generator object.

Format

<pre>oligoType$new(threePrimeTag = NULL,
 fivePrimeTag = NULL, sequence)</pre>@section Fields:<dl class="dl-horizontal">
 <dt><code>threePrimeTag</code></dt><dd><a rd-options="checkmate" href="/link/checkString?package=RDML&version=1.0&to=checkmate" data-mini-rdoc="checkmate::checkString">checkString</a>. Description of
 three prime modification (if present).</dd>
 <dt><code>fivePrimeTag</code></dt><dd><a rd-options="checkmate" href="/link/checkString?package=RDML&version=1.0&to=checkmate" data-mini-rdoc="checkmate::checkString">checkString</a>. Description of
 five prime modification (if present).</dd>
 <dt><code>sequence</code></dt><dd><a rd-options="checkmate" href="/link/checkString?package=RDML&version=1.0&to=checkmate" data-mini-rdoc="checkmate::checkString">checkString</a>.</dd>
 </dl>

Initialization

Inherits: <a rd-options='' href='rdmlBaseType'>rdmlBaseType</a>.

oligoType R6 class. — oligoType

An <code><a rd-options='' href='R6Class'>R6Class</a></code> generator object.

oligoType: oligoType R6 class.

Description

Usage

Arguments

Format

Initialization