a list with length being nMK; each element is a matrix with nSample by nSigGene;
each element matrix is deltaT for each sigGene(row) when genotype of sample i (column) is perturbed;
gt0
original genotype data
gt.thres
threshold to decide if thr original genotype is correct
optGTplot
If TRUE it produces a plot of the genotype with two colors: green and red color indicate the original genotype of a sample (column) at certain marker (row) is correct or correct, respectively.
References
Li Y et al, reGenotyper: detecting mislabeled samples in genetic data (submitted)