otu_table-class


  Because orientation of these tables can vary by method,
  the orientation is defined explicitly in the
  <code>taxa_are_rows</code> slot (a logical). The
  <code>otu_table</code> class inherits the <code><a rd-options="" href="/link/matrix?package=phyloseq&version=1.12.2" data-mini-rdoc="phyloseq::matrix">matrix</a></code>
  class to store abundance values. Various standard subset
  and assignment nomenclature has been extended to apply to
  the <code>otu_table</code> class, including square-bracket,
  <code><a rd-options="" href="/link/t?package=phyloseq&version=1.12.2" data-mini-rdoc="phyloseq::t">t</a></code>, etc.


phyloseq provides a set of classes and tools
to facilitate the import, storage, analysis, and
graphical display of microbiome census data.

Paul J McMurdie

phyloseq

Handling and analysis of high-throughput microbiome
census data.

otu_table-class function


  Because orientation of these tables can vary by method,
  the orientation is defined explicitly in the
  <code>taxa_are_rows</code> slot (a logical). The
  <code>otu_table</code> class inherits the <code><a rd-options='' href='matrix'>matrix</a></code>
  class to store abundance values. Various standard subset
  and assignment nomenclature has been extended to apply to
  the <code>otu_table</code> class, including square-bracket,
  <code><a rd-options='' href='t'>t</a></code>, etc.


otu_table-class: The S4 class for storing taxa-abundance information.

Description

Arguments

Details