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vegan (version 1.6-8)
Community Ecology Package
Description
Ordination methods and other useful functions for community and vegetation ecologists.
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Install
install.packages('vegan')
Monthly Downloads
110,476
Version
1.6-8
License
GPL2
Maintainer
Jari Oksanen
Last Published
June 6th, 2025
Functions in vegan (1.6-8)
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bioenv
Best Subset of Environmental Variables with Maximum (Rank) Correlation with Community Dissimilarities
deviance.cca
Statistics Resembling Deviance and AIC for Constrained Ordination
ordiplot
Alternative plot and identify Functions for Ordination
varespec
Vegetation and environment in lichen pastures
goodness.metaMDS
Goodness of Fit and Shepard Plot for Nonmetric Multidimensional Scaling
radfit
Rank -- Abundance or Dominance / Diversity Models
vegdist
Dissimilarity Indices for Community Ecologists
scores
Get Species or Site Scores from an Ordination
capscale
[Partial] Constrained Analysis of Principal Coordinates
ordiplot3d
Three-Dimensional and Dynamic Ordination Graphics
goondess.cca
Diagnostic Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
ordisurf
Smooths Variables and Plots Contours on Ordination.
diversity
Ecological Diversity Indices and Rarefaction Species Richness
rankindex
Compares Dissimilarity Indices for Gradient Detection
cca
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis
plot.cca
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis
humpfit
No-interaction Model for Hump-backed Species Richness vs. Biomass
mantel
Mantel and Partial Mantel Tests for Dissimilarity Matrices
wascores
Weighted Averages Scores for Species
distconnected
Connectedness and Minimum Spanning Tree for Dissimilarities
read.cep
Reads a CEP (Canoco) data file
decostand
Standardizaton Methods for Community Ecology
ordihull
Add Graphical Items to Ordination Diagrams
make.cepnames
Abbreviates a Botanical or Zoological Latin Name into an Eight-character Name
anova.cca
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates
dune
Vegetation and Environment in Dutch Dune Meadows.
anosim
Analysis of Similarities
BCI
Barro Colorado Island Tree Counts
vegemite
Prints a Compact, Ordered Vegetation Table
specpool
Extrapolated Species Richness in a Species Pool
predict.cca
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
specaccum
Species Accumulation Curves
stepacross
Stepacross as Flexible Shortest Paths or Extended Dissimilarities
fisherfit
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data
metaMDS
Nonmetric Multidimensional Scaling with Stable Solution from Random Starts, Axis Scaling and Species Scores
decorana
Detrended Correspondence Analysis and Basic Reciprocal Averaging
procrustes
Procrustes Rotation of Two Configurations
envfit
Fits an Environmental Vector or Factor onto an Ordination
vegan-internal
Internal vegan functions