parameter


This <code><a rd-options="CALIB:ParameterList-class" href="/link/ParameterList?package=CALIB&version=1.38.0&to=CALIB%3AParameterList-class" data-mini-rdoc="CALIB:ParameterList-class::ParameterList">ParameterList</a></code> object
represents calibration 
 
model parameters of two arrays. It was estimated from the dataset
<code><a rd-options="" href="/link/spike?package=CALIB&version=1.38.0" data-mini-rdoc="CALIB::spike">spike</a></code>
 
by the function <code><a rd-options="" href="/link/estimateParameter?package=CALIB&version=1.38.0" data-mini-rdoc="CALIB::estimateParameter">estimateParameter</a></code> in the CALIB package. 


datasets

This package contains functions for normalizing spotted
microarray data, based on a physically motivated calibration
model. The model parameters and error distributions are estimated
from external control spikes.

Hui Zhao

CALIB

Calibration model for estimating absolute expression
levels from microarray data

parameter function

<code>parameter</code> is a <code>ParameterList</code> object containing the following list 
components:\$MuS,\$Ka,\$P1,\$P2,\$SigmaA,\$SigmaM,\$SigmaS,\$SpotError,\$Method
with two subfields \$Method\$BC and \$Method\$Area, \$ErrorModel and \$genes.
Among these parameters,P1,P2 and SigamA are different for different dyes.

Format

This <code><a href="ParameterList" rd-options="CALIB:ParameterList-class">ParameterList</a></code> object
represents calibration  
model parameters of two arrays. It was estimated from the dataset
<code><a href="spike" rd-options="">spike</a></code> 
by the function <code><a href="estimateParameter" rd-options="">estimateParameter</a></code> in the CALIB package.

parameter: Calibration Model parameter: ParameterList Example

Description

Usage

Arguments

Format

References

Examples