parse_unite_general

(<code>character</code>) One of the following:<dl class="dl-horizontal">
 <dt>A character vector of sequences</dt><dd>See the example below for what this
 looks like. The parser <code><a rd-options="" href="/link/read_fasta?package=metacoder&version=0.3.3" data-mini-rdoc="metacoder::read_fasta">read_fasta</a></code> produces output like this.</dd>
 <dt>A list of character vectors</dt><dd>Each vector should have one base per element.</dd>
 <dt>A "DNAbin" object</dt><dd>This is the result of parsers like
 <code><a rd-options="ape" href="/link/read.FASTA?package=metacoder&version=0.3.3&to=ape" data-mini-rdoc="ape::read.FASTA">read.FASTA</a></code>.</dd>
 <dt>A list of "SeqFastadna" objects</dt><dd>This is the result of parsers like
 <code><a rd-options="seqinr" href="/link/read.fasta?package=metacoder&version=0.3.3&to=seqinr" data-mini-rdoc="seqinr::read.fasta">read.fasta</a></code>.</dd>
 Either "input" or "file" must be supplied but not both.
</dl>

input

The path to a FASTA file containing sequences to use. Either
"input" or "file" must be supplied but not both.

file

(<code>logical</code> of length 1) If <code>TRUE</code>, include
sequences in the output object.

include_seqs

Parse the UNITE general release FASTA file

A set of tools for parsing, manipulating, and graphing data
classified by a hierarchy (e.g. a taxonomy).

Zachary Foster

metacoder

Tools for Parsing, Manipulating, and Graphing Taxonomic
Abundance Data

Niklaus Grunwald

Rob Gilmore

parse_unite_general function

(<code>character</code>) One of the following:<dl class='dl-horizontal'>
 <dt>A character vector of sequences</dt><dd>See the example below for what this
 looks like. The parser <code><a rd-options='' href='read_fasta'>read_fasta</a></code> produces output like this.</dd>
 <dt>A list of character vectors</dt><dd>Each vector should have one base per element.</dd>
 <dt>A "DNAbin" object</dt><dd>This is the result of parsers like
 <code><a rd-options='ape' href='read.FASTA'>read.FASTA</a></code>.</dd>
 <dt>A list of "SeqFastadna" objects</dt><dd>This is the result of parsers like
 <code><a rd-options='seqinr' href='read.fasta'>read.fasta</a></code>.</dd>
 Either "input" or "file" must be supplied but not both.
</dl>

parse_unite_general: Parse UNITE general release FASTA

Description

Usage

Arguments

Value

Details

See Also