Plot a summary diagram for argo data.
# S4 method for argo
plot(x, which = 1, level, coastline = c("best",
"coastlineWorld", "coastlineWorldMedium", "coastlineWorldFine", "none"),
cex = 1, pch = 1, type = "p", col, fill = FALSE, adorn = NULL,
projection = NULL, mgp = getOption("oceMgp"), mar = c(mgp[1] + 1.5,
mgp[1] + 1.5, 1.5, 1.5), tformat, debug = getOption("oceDebug"), ...)object inheriting from argo-class.
list of desired plot types, one of the following. Note
that oce.pmatch is used to try to complete partial
character matches, and that an error will occur if the match is
not complete (e.g. "salinity" matches to both
"salinity ts" and "salinity profile".).
which=1 or which="trajectory" gives a
plot of the argo trajectory, with the coastline, if one is provided.
which=2 or "salinity ts" gives a time series of
salinity at the indicated level(s)
which=3 or "temperature ts" gives a time series
of temperature at the indicated level(s)
which=4 or "TS" gives a TS diagram at the
indicated level(s)
which=5 or "salinity profile" gives a salinity
profile of all the data (with S and p trimmed to the 1 and 99
percentiles)
which=6 or "temperature profile" gives a
temperature profile (with T and p trimmed to the 1 and 99
percentiles)
depth pseudo-level to plot, for which=2 and higher. May be an
integer, in which case it refers to an index of depth (1 being the top)
or it may be the string "all" which means to plot all data.
character string giving the coastline to be used in an Argo-location
map, or "best" to pick the one with highest resolution, or
"none" to avoid drawing the coastline.
size of plotting symbols to be used if type='p'.
type of plotting symbols to be used if type='p'.
plot type, either "l" or "p".
optional list of colours for plotting.
Either a logical, indicating whether to fill the land with light-gray, or a colour name. Owing to problems with some projections, the default is not to fill.
(Defunct)
An expression or vector of expressions that contain
R code that is to be executed immediately after each panel of the plot.
If the number of expressions matches the number of panels, then the
expressions are used for the corresponding panels; otherwise, the
expression list is extended to match the number of panels (i.e.
to obtain length(which) elements). Note that adorn
is a dangerous argument, because if the expressions contained
therein set up local storage, there is a chance of entirely
disrupting the plotting. For this reason, adorn was
marked as defunct in June 2016, and will be removed entirely
after the July CRAN release. Users with existing code that uses
adorn should simply plot the panels individually, and
use conventional R functions, e.g. lines etc.,
after each panel, to achieve the desired effect. (See
oce-defunct for notes on other deprecated or
defunct oce features.)
indication of the projection to be used
in trajetory maps. If this is NULL, no projection is used, although
the plot aspect ratio will be set to yield zero shape distortion at the
mean float latitude. If projection="automatic", then one
of two projections is used: stereopolar (i.e. "+proj=stere +lon_0=X"
where X is the mean longitude), or Mercator (i.e. "+proj=merc")
otherwise. Otherwise, projection must be a character string specifying
a projection in the notation used by project in the rgdal;
this will be familiar to many readers as the PROJ.4 notation;
see mapPlot.
3-element numerical vector to use for par(mgp), and also for
par(mar), computed from this. The default is tighter than the R
default, in order to use more space for the data and less for the axes.
value to be used with par("mar").
optional argument passed to oce.plot.ts, for plot
types that call that function. (See strptime for the format
used.)
debugging flag.
optional arguments passed to plotting functions.
None.
Other things related to argo data: [[,argo-method,
[[<-,argo-method, argo-class,
argoGrid, argoNames2oceNames,
argo, as.argo,
handleFlags,argo-method,
read.argo,
subset,argo-method,
summary,argo-method
Other functions that plot oce data: plot,adp-method,
plot,adv-method,
plot,amsr-method,
plot,bremen-method,
plot,cm-method,
plot,coastline-method,
plot,ctd-method,
plot,gps-method,
plot,ladp-method,
plot,lisst-method,
plot,lobo-method,
plot,met-method,
plot,odf-method,
plot,rsk-method,
plot,satellite-method,
plot,sealevel-method,
plot,section-method,
plot,tidem-method,
plot,topo-method,
plot,windrose-method,
plotProfile, plotScan,
plotTS, tidem-class
# NOT RUN {
library(oce)
data(argo)
plot(argo, which="trajectory")
# }
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