plot.pairdistance

plot.pairdistance-method


    an object of the class "cobindr", which will hold all necessary
    information about the sequences and the hits.


 number of breaks to separate the distance distribution into

flag allowing to plot foreground or background distance distribution


For a specified pair of PWMs the function creates histogram plot of distances between pairs of TFs as specified by pwm1 and pwm2


Finding and analysing co-occuring motifs of transcription
factor binding sites in groups of genes

an object of the class "cobindr", which will hold all necessary
    information about the sequences and the hits.

number of breaks to separate the distance distribution into

For a specified pair of PWMs the function creates histogram plot of distances between pairs of TFs as specified by pwm1 and pwm2