plot.positionprofile:
function to plot a profile over the total number of predicted
transcription factor binding sites for each PWM.
Description
plot.positionprofile provides position-wise profile plot over total
number of predicted TFBS for each PWM over all input
sequences. Windowing is used to provide a smoother appreance, the window
size can be adjusted with the window parameter.
Usage
"plot.positionprofile"(x, wind.len = 50)
Arguments
x
an object of the class "cobindr", which will hold all necessary
information about the sequences and the hits.
wind.len
integer, defining the length of the window for counting the hits.