pavo (version 2.5.0)

plot.rspec: Plot spectra

Description

Plots reflectance spectra in different arrangements.

Usage

# S3 method for rspec
plot(
  x,
  select = NULL,
  type = c("overlay", "stack", "heatmap"),
  varying = NULL,
  n = 100,
  labels.stack = NULL,
  wl.guide = TRUE,
  ...
)

Arguments

x

(required) a data frame, possibly an object of class rspec, with a column with wavelength data, named 'wl', and the remaining column containing spectra to plot.

select

specification of which spectra to plot. Can be a numeric vector or factor (e.g., sex=="male")

type

what type of plot should be drawn. Possibilities are:

• overlay (default) for plotting multiple spectra in a single panel with a common y-axis.

• stack for plotting multiple spectra in a vertical arrangement.

• heatmap for plotting reflectance values by wavelength and a third variable (varying).

varying

a numeric vector giving values for y-axis in type = "heatmap".

n

number of bins with which to interpolate colors and varying for the heatplot.

labels.stack

a vector of labels for the stacked spectra when using type = "stack". Defaults to the numeric column ID's.

wl.guide

logical determining whether visible light spectrum should be added to the x-axis.

...

additional arguments passed to plot() (or image() for "heatmap").

See Also

spec2rgb(), image(), plot()

Examples

# NOT RUN {
data(teal)
plot(teal, type = "overlay")
plot(teal, type = "stack")
plot(teal, type = "heatmap")
# }