Diagnostic plots.
# S4 method for pomp_plottable
plot(
x,
variables,
panel = lines,
nc = NULL,
yax.flip = FALSE,
mar = c(0, 5.1, 0, if (yax.flip) 5.1 else 2.1),
oma = c(6, 0, 5, 0),
axes = TRUE,
...
)# S4 method for Pmcmc
plot(x, ..., pars)
# S4 method for Abc
plot(x, ..., pars, scatter = FALSE)
# S4 method for Mif2
plot(x, ..., pars, transform = FALSE)
# S4 method for probed_pomp
plot(x, y, ...)
# S4 method for spectd_pomp
plot(
x,
...,
max.plots.per.page = 4,
plot.data = TRUE,
quantiles = c(0.025, 0.25, 0.5, 0.75, 0.975),
quantile.styles = list(lwd = 1, lty = 1, col = "gray70"),
data.styles = list(lwd = 2, lty = 2, col = "black")
)
# S4 method for bsmcd_pomp
plot(x, pars, thin, ...)
# S4 method for probe_match_objfun
plot(x, y, ...)
# S4 method for spect_match_objfun
plot(x, y, ...)
the object to plot
optional character; names of variables to be displayed
function of the form panel(x, col, bg, pch, type, ...) which gives the action to be carried out in each panel of the display.
the number of columns to use. Defaults to 1 for up to 4 series, otherwise to 2.
logical; if TRUE, the y-axis (ticks and numbering) should flip from side 2 (left) to 4 (right) from series to series.
the par mar and oma settings.
Modify with care!
logical; indicates if x- and y- axes should be drawn
ignored or passed to low-level plotting functions
names of parameters.
logical; if FALSE, traces of the parameters named in pars will be plotted against ABC iteration number.
If TRUE, the traces will be displayed or as a scatterplot.
logical; should the parameter be transformed onto the estimation scale?
ignored
positive integer; maximum number of plots on a page
logical; should the data spectrum be included?
numeric; quantiles to display
list; plot styles to use for quantiles
list; plot styles to use for data
integer; when the number of samples is very large, it can be helpful to plot a random subsample:
thin specifies the size of this subsample.