plotDomainogramNearViewpoint

plotDomainogramNearViewpoint,r3Cseq-method

object


		A level at which cubic smoothing spline for the spar (see vsmooth.spline) input parameter. Must be in (0.06,0.4] (default=0.1)
	

smoothing.parameter


		Numeric. The distance relative to the viewpoint (default=5e5)
	

distance


		Numeric. The maximum windowing (default=25e3). We normally compute the interaction regions per window starting from 2Kb to maximum window (default=25kb) to make the interaction matrix
		for visualizing the domainogram.
	

maximum_window


		character. The selected view of data (default="experiment")
	

view


  Plot domainogram of interaction regions near the viewpoint 


This package is an implementation of data analysis for the
long-range interactions from 3C-seq assay.

Supat Thongjuea

r3Cseq

Analysis of Chromosome Conformation Capture and Next-generation
Sequencing (3C-seq)

plotDomainogramNearViewpoint function

A level at which cubic smoothing spline for the spar (see vsmooth.spline) input parameter. Must be in (0.06,0.4] (default=0.1)

Numeric. The distance relative to the viewpoint (default=5e5)

Numeric. The maximum windowing (default=25e3). We normally compute the interaction regions per window starting from 2Kb to maximum window (default=25kb) to make the interaction matrix
		for visualizing the domainogram.

character. The selected view of data (default="experiment")

Plot domainogram of interaction regions near the viewpoint

plotDomainogramNearViewpoint: Plot domainogram of interaction regions near the viewpoint

Description

Usage

Arguments

Value

See Also

Examples