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When implemented as the S4 method for objects of class GSCA
, this function
will plot and save an enrichment map for GSEA or Hypergeometric test results.
To use this function for objects of class GSCA
:
plotEnrichMap(object, resultName="GSEA.results", gscs, ntop=NULL, allSig=TRUE, gsNameType="id", displayEdgeLabel=TRUE, layout= "layout.fruchterman.reingold", filepath=".", filename="test.png", output="png", ...)
plotEnrichMap(object, ...)
GSCA
)
viewEnrichMap
## Not run:
# library(org.Dm.eg.db)
# library(KEGG.db)
# ##load data for enrichment analyses
# data("KcViab_GSCA")
# ##plot and save the enrichment map
# plotEnrichMap(KcViab_GSCA, gscs=c("GO_MF"), allSig=TRUE, ntop=NULL, gsNameType="id",
# displayEdgeLabel=FALSE,layout="layout.fruchterman.reingold", filepath="~",
# filename="GO_MF.pdf",output="pdf", width=8, height=8)
# ## End(Not run)
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