Usage
plotFDR(post1, post2 = NULL, lg1 = "FDR 1", lg2 = NULL, title = NULL, compH0 = 1, alpha = 0.1, complete.data = NULL, pctfdr = 0.3)
Arguments
post1
The matrix of posterior probabilities from objects such as the output
from spEMsymlocN01. The rows need to be sorted by increasing pvalues. post2
A second object like post1 if comparison is desired, also sorted by increasing pvalues.
lg1
Text describing the FDR estimate in post1.
lg2
Text describing the FDR estimate in post2 if provided.
title
Plot title, a default is provided if NULL.
compH0
The component indicator associated to the null hypothesis H0,
normally 1 since it is defined in this way in spEMsymlocN01, but in case of label switching in other algorithms it can be set to 2. alpha
The target FDR level; the index at which the FDR estimate crosses the horizontal line for level alpha gives the maximum number of cases to reject.
complete.data
An array with $n$ lines and 2 columns, with the component indicator in column 1 and the p-values in column 2, sorted by p-values.
pctfdr
The level up to which the FDR is plotted, i.e.
the scale of the vertical axis.