mizer (version 2.0.3)

plotFMort: Plot total fishing mortality of each species by size

Description

After running a projection, plot the total fishing mortality of each species by size. The total fishing mortality is averaged over the specified time range (a single value for the time range can be used to plot a single time step).

Usage

plotFMort(object, species = NULL, time_range, highlight = NULL, ...)
plotlyFMort(object, species = NULL, time_range, highlight = NULL, ...)

Arguments

object

An object of class '>MizerSim or '>MizerParams.

species

Name or vector of names of the species to be plotted. By default all species are plotted.

time_range

The time range (either a vector of values, a vector of min and max time, or a single value) to average the abundances over. Default is the final time step. Ignored when called with a '>MizerParams object.

highlight

Name or vector of names of the species to be highlighted.

...

Other arguments (currently unused)

Value

A plot

See Also

plotting_functions, getFMort()

Other plotting functions: plot,MizerSim,missing-method, plotBiomass(), plotDiet(), plotFeedingLevel(), plotGrowthCurves(), plotPredMort(), plotSpectra(), plotYieldGear(), plotYield(), plotting_functions

Examples

# NOT RUN {
params <- suppressMessages(newMultispeciesParams(NS_species_params_gears, inter))
sim <- project(params, effort=1, t_max=20, t_save = 2, progress_bar = FALSE)
plotFMort(sim)
plotFMort(sim, highlight = c("Cod", "Haddock"))
# }