Usage
plotIndex(model, what="s", series=NULL, axes=TRUE, same.limits=FALSE, between=list(x=axes,y=axes), ylim=NULL, q=1, bar=1, log=FALSE, base=10, main="", xlab="", ylab="", cex.main=1.2, cex.lab=1, cex.axis=0.8, cex.strip=0.8, col.strip="gray95", strip=strip.custom(bg=col.strip), las=1, tck=c(1,0)/2, tick.number=5, lty.grid=3, col.grid="white", pch=16, cex.points=1.2, col.points="black", lty.lines=1, lwd.lines=4, col.lines="dimgray", lty.bar=1, plot=TRUE, ...)
Arguments
model
fitted scape
model containing element CPUE
and/or Survey
.
what
what to plot: "c"
[ommercial] or "s"
[urvey]
abundance index.
series
vector of strings indicating which gears or surveys to
plot (all by default).
axes
whether to plot axis values.
same.limits
whether panels should have same y-axis limits.
between
list with x
and y
indicating panel
spacing.
ylim
vector with lower and upper y-axis limits.
q
denominator to scale the y axis, e.g. to vulnerable biomass.
Similar to the div
argument in plotN
and
plotB
.
bar
extent of error bars relative to standard error.
log
whether to log-transform values.
cex.main
size of main title.
cex.lab
size of axis labels.
cex.axis
size of tick labels.
cex.strip
size of strip labels.
col.strip
color of strip labels.
strip
logical flag (whether to plot strip labels), or a
function passed to xyplot
.
las
orientation of tick labels: 0=parallel, 1=horizontal,
2=perpendicular, 3=vertical.
tick.number
number of tick marks.
lty.grid
line type of gridlines.
col.grid
color of gridlines.
cex.points
size of points.
col.points
color of points and error bars.
lty.lines
line type of main lines.
lwd.lines
line width of main lines.
col.lines
color of main lines.
lty.bar
line type of error bars.
plot
whether to draw plot.
...
passed to xyplot
, panel.xyplot
, and
panel.xYplot
.