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xps (version 1.32.0)

plotNUSE: Box Plots of Normalized Unscaled Standard Errors (NUSE) for Device

Description

Produce boxplot of Normalized Unscaled Standard Errors (NUSE) for the set of arrays and the selected device.

Usage

plotNUSE(x, which    = "UnitName", size     = 0, range    = 0, names    = "namepart", main     = "NUSE Plot", ylim     = c(0.8,1.2), las      = 2, add.line = TRUE, outline  = FALSE, dev      = "screen", outfile  = "NUSEPlot", w        = 800, h        = 540, ...)

Arguments

x
object of class ExprTreeSet or QualTreeSet.
which
type of probes to be used, for details see validData.
size
length of sequence to be generated as subset.
range
determines how far the plot whiskers extend out from the box.
names
optional vector of sample names.
main
the main title for the plot.
ylim
range for the plotted y values.
las
the style of axis labels.
add.line
logical, if TRUE a horizontal line is drawn.
outline
if outline is not true, the outliers are not drawn.
dev
graphics device to plot to, i.e. one of “screen”, “jpeg”,“png”, “pdf” or “ps”.
outfile
the name of the output file.
w
the width of the device in pixels.
h
the height of the device in pixels.
...
optional arguments to be passed to boxplot.

Details

Create boxplots of Normalized Unscaled Standard Errors (NUSE) for the set of arrays.

For names=NULL full column names of slot data will be displayed while for names="namepart" column names will be displayed without name extension. If names is a vector of column names, only these columns will displayed as boxplot.

See Also

nuseplot