phylobase (version 0.6.8)

plotOneTree: Plot a phylo4 object

Description

Plots the phylogenetic tree contained in a phylo4 or phylo4d object.

Usage

plotOneTree(xxyy, type, show.tip.label, show.node.label, 
  edge.color, node.color, tip.color, edge.width, rot)

Arguments

xxyy

A list created by the phyloXXYY function

type

A character string indicating the shape of plotted tree

show.tip.label

Logical, indicating whether tip labels should be shown

show.node.label

Logical, indicating whether node labels should be shown

edge.color

A vector of colors in the order of edges(phy)

node.color

A vector of colors indicating the colors of the node labels

tip.color

A vector of colors indicating the colors of the tip labels

edge.width

A vector in the order of edges(phy) indicating the widths of edge lines

rot

Numeric indicating the rotation of the plot in degrees

Value

• Returns no values, function invoked for the plotting side effect.

See Also

treePlot, phyloXXYY

Examples

data(geospiza)
grid.newpage()
xxyy <- phyloXXYY(geospiza)
plotOneTree(xxyy, type = 'phylogram', 
  show.tip.label = TRUE, show.node.label = TRUE,
  edge.color = 'black', node.color = 'orange', tip.color = 'blue',
  edge.width = 1, rot = 0
)

grid.newpage()
pushViewport(viewport(w = 0.8, h = 0.8))
plotOneTree(xxyy, type = 'phylogram', 
  show.tip.label = TRUE, show.node.label = TRUE,
  edge.color = 'black', node.color = 'orange', tip.color = 'blue',
  edge.width = 1, rot = 0
)
popViewport()