Usage
plotPosOneAnnotInComp_ggplot(icaSet, params, colAnnot, keepLev = NULL, keepComp, samples, colAll = "grey74", binwidth = 0.1, addExpr = TRUE, file = NULL, ...)
Arguments
icaSet
An object of class IcaSet
params
An object of the class MineICAParams
containing the parameters of the analysis
colAnnot
a variable label, i.e one of the
variables available in (varLabels(icaSet))
containing the groups of interest
samples
a subset of sample names available in
samplenames(icaSet), if NULL (default) all samples
are used
keepComp
a subset of components available in
indComp(icaSet), if NULL (default) all components
are used
keepLev
the groups of interest, i.e the levels of
the variable colAnnot to be considered
colAll
The colour of the global histogram, default
is "grey74"
file
the file where the histograms will be
plotted
addExpr
if TRUE (default) the expression profiles
of the witness genes of each component are added below
the plot
binwidth
binwidth of the histogram (default is
0.1)
...
other parameters for geom_histogram function
from ggplot2 package