netdiffuseR (version 1.16.7)

plot_diffnet2: Another way of visualizing diffusion

Description

Another way of visualizing diffusion

Usage

plot_diffnet2(graph, ...)
"plot_diffnet2"(graph, toa = NULL, slice = nslices(graph), color.ramp = grDevices::colorRamp(c("skyblue", "yellow", "red")), layout = NULL, key.width = 0.1, key.title = "Time of Adoption", main = "Diffusion dynamics", vertex.size = NULL, vertex.shape = NULL, vertex.label = "", vertex.frame.color = "gray", edge.arrow.size = 0.5, edge.curved = FALSE, add.map = NULL, diffmap.args = list(kde2d.args = list(n = 100)), diffmap.alpha = 0.5, include.white = "first", rescale.fun = rescale_vertex_igraph, ...)
"plot_diffnet2"(graph, toa, pers = min(toa, na.rm = TRUE):max(toa, na.rm = TRUE), color.ramp = grDevices::colorRamp(c("skyblue", "yellow", "red")), layout = NULL, key.width = 0.1, key.title = "Time of\nAdoption", main = "Diffusion dynamics", vertex.size = NULL, vertex.shape = NULL, vertex.label = "", vertex.frame.color = "gray", edge.arrow.size = 0.5, edge.curved = FALSE, add.map = NULL, diffmap.args = list(kde2d.args = list(n = 100)), diffmap.alpha = 0.5, include.white = "first", rescale.fun = rescale_vertex_igraph, ...)

Arguments

graph

Either a square matrix or a diffnet object.

...

Further arguments passed to plot.igraph.

toa

Integer vector of length $n$ with the times of adoption.

slice

Integer scalar. Number of slice to use as baseline for drawing the graph.

color.ramp

A function as returned by colorRamp.

layout

Passed to plot.igraph.

key.width

Numeric scalar. Sets the proportion of the plot (x-axis) that the key uses.

key.title

Character scalar. Title of the key (vertex colors).

main

Character scalar. Title of the graph.

vertex.size

Passed to plot.igraph.

vertex.shape

Passed to plot.igraph.

vertex.label

Passed to plot.igraph.

vertex.frame.color

Passed to plot.igraph.

edge.arrow.size

Passed to plot.igraph.

edge.curved

Passed to plot.igraph.

add.map

Character scalar. When "first" plots a diffusionMap before the graph itself. If "last" then it adds it at the end. When NULL adds nothing.

diffmap.args

List. If add.map=TRUE, arguments passed to diffusionMap.

diffmap.alpha

Numeric scalar between [0,1]. Alpha level for the map.

include.white

Character scalar. Includes white in the color palette used in the map. When include.white=NULL then it won't include it.

rescale.fun

A function to rescale vertex size. By defult it is set to be rescale_vertex_igraph

pers

Integer vector of length $T$ indicating the time periods of the data.

Value

A list with the following elements

layout

A numeric matrix with vertex coordinates.

vertex.color

A character vector with computed colors for each vertex.

vertex.label

The value passed to plot_diffnet2.

vertex.shape

A character vector with assigned shapes.

vertex.size

A numeric vector with vertices sizes

diffmap

If add.map=TRUE, the returned values from diffmap

Details

If key.width<=0< code=""> then no key is created.

See Also

Other visualizations: diffusionMap, drawColorKey, hazard_rate, plot_adopters, plot_diffnet, plot_infectsuscep, plot_threshold, rescale_vertex_igraph