popCellPicker: Pop up imageHTS web modules

Description

Pop up the imageHTS web modules cellPicker and webQuery, using the web browser.

Usage

popCellPicker(x, uname, spot, id.highlight, access='server', browse=TRUE)
popWebQuery(x, access='server', browse=TRUE)

Arguments

An imageHTS object.

uname

A character vector, containing the well names to annotate. See getUnames for details.

spot

An optional numeric vector, containing the spot indexes of the wells to annotate. If missing, only the first spot is used.

id.highlight

An optional numeric vector, containing the object indexes to highlight. If missing, no object is highlighted.

access

A character string indicating how to access the data. Valid values are local, cache and server, the default. See fileHTS for details.

browse

A logical indicating whether the web browser should be loaded. Default is TRUE.

Value

A character string containing the URL to access the cellPicker or the webQuery web module.

Details

cellPicker must be installed using installCellPicker before using popCellPicker on the local project directory. If present, the numeric vector spot must have the same length as uname.

webQuery must be installed using installWebQuery before using popWebQuery on the local project directory.

Examples

Run this code

## initialize imageHTS object using the remote kimorph screen
local = tempdir()
server = 'http://www.ebi.ac.uk/huber-srv/cellmorph/kimorph/'
x = parseImageConf('conf/imageconf.txt', localPath=local, serverURL=server)

if (interactive()) {
  popCellPicker(x, uname=c('002-02-A11', '001-01-C17'))
  popWebQuery(x)
}

Run the code above in your browser using DataLab

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