UniProt.ws (version 2.12.0)

UNIPROTKB: Descriptions of available values for columns and keytypes.

Description

This manual page enumerates the kinds of data represented by the values returned when the user calls columns or keytypes

Details

All the possible values for columns and keytypes are listed below. Users will have to actually use these methods to learn which of the following possible values actually apply in their case. [object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

Examples

library(UniProt.ws)
  up <- UniProt.ws(taxId=9606)
  ## List the possible values for columns
  columns(up)
  ## List the possible values for keytypes
  keytypes(up)
  ## get some values back
  ## list all possible keys of type entrez gene ID.
  ## (this process is not instantaneous)
  if(interactive()){
    keys <- head(keys(up, keytype="UNIPROTKB"))
    keys
  }
  select(up, keys=c("P31946","P62258"), columns=c("PDB","SEQUENCE"),
  keytype="UNIPROTKB")