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vegan (version 1.8-5)
Community Ecology Package
Description
Ordination methods, diversity analysis and other functions for community and vegetation ecologists.
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Install
install.packages('vegan')
Monthly Downloads
115,039
Version
1.8-5
License
GPL v2 (but not later)
Maintainer
Jari Oksanen
Last Published
January 29th, 2025
Functions in vegan (1.8-5)
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distconnected
Connectedness of Dissimilarities
cascadeKM
K-means partitioning using a range of values of K
beals
Beals Smoothing of Community Data
diversity
Ecological Diversity Indices and Rarefaction Species Richness
fisherfit
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data
cca
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis
linestack
Plots One-dimensional Diagrams without Overwriting Labels
goodness.metaMDS
Goodness of Fit and Shepard Plot for Nonmetric Multidimensional Scaling
goodness.cca
Diagnostic Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
metaMDS
Nonmetric Multidimensional Scaling with Stable Solution from Random Starts, Axis Scaling and Species Scores
envfit
Fits an Environmental Vector or Factor onto an Ordination
BCI
Barro Colorado Island Tree Counts
decorana
Detrended Correspondence Analysis and Basic Reciprocal Averaging
mrpp
Multi Response Permutation Procedure of Within- versus Among-Group Dissimilarities
vegemite
Prints a Compact, Ordered Vegetation Table
anova.cca
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates
make.cepnames
Abbreviates a Botanical or Zoological Latin Name into an Eight-character Name
dune
Vegetation and Environment in Dutch Dune Meadows.
radfit
Rank -- Abundance or Dominance / Diversity Models
mite
Oribatid Mite Data with Explanatory Variables
varespec
Vegetation and environment in lichen pastures
specpool
Extrapolated Species Richness in a Species Pool
vegandocs
Display Package Documentation
varpart
Partition the Variation of Community Matrix by 2, 3, or 4 Explanatory Matrices
ordihull
Add Graphical Items to Ordination Diagrams
deviance.cca
Statistics Resembling Deviance and AIC for Constrained Ordination
rankindex
Compares Dissimilarity Indices for Gradient Detection
scores
Get Species or Site Scores from an Ordination
specaccum
Species Accumulation Curves
decostand
Standardizaton Methods for Community Ecology
vegdist
Dissimilarity Indices for Community Ecologists
predict.cca
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
prc
Principal Response Curves for Treatments with Repeated Observations
renyi
Renyi and Hill Diversities and Corresponding Accumulation Curves
plot.cca
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis
capscale
[Partial] Constrained Analysis of Principal Coordinates or distance-based RDA
cca.object
Result Object from Constrained Ordination with cca, rda or capscale
ordisurf
Fit and Plot Smooth Surfaces of Variables on Ordination.
bioenv
Best Subset of Environmental Variables with Maximum (Rank) Correlation with Community Dissimilarities
spantree
Minimum Spanning Tree
stepacross
Stepacross as Flexible Shortest Paths or Extended Dissimilarities
anosim
Analysis of Similarities
humpfit
No-interaction Model for Hump-backed Species Richness vs. Biomass
wascores
Weighted Averages Scores for Species
vegan-internal
Internal vegan functions
ordiplot
Alternative plot and identify Functions for Ordination
orditorp
Add Text or Points to Ordination Plots
mantel
Mantel and Partial Mantel Tests for Dissimilarity Matrices
pyrifos
Response of Aquatic Invertebrates to Insecticide Treatment
procrustes
Procrustes Rotation of Two Configurations
ordiplot3d
Three-Dimensional and Dynamic Ordination Graphics
read.cep
Reads a CEP (Canoco) data file