phyclust (version 0.1-11)

print.object: Functions for Printing or Summarizing Objects According to Classes

Description

Several classes are declared in phyclust, and these are functions to print and summary objects.

Usage

## S3 method for class 'baseml':
print(x, ...)
## S3 method for class 'ms':
print(x, ...)
## S3 method for class 'phyclust':
print(x, digits = max(4, getOption("digits") - 3), ...)
## S3 method for class 'Pt':
print(x, ...)
## S3 method for class 'RRand':
print(x, digits = max(4, getOption("digits") - 3), ...)
## S3 method for class 'seq.data':
print(x, ...)
## S3 method for class 'seqgen':
print(x, ...)
## S3 method for class 'phyclust':
summary(object, ...)

Arguments

x

an object with the class attributes.

digits

for printing out numbers.

object

an object with the class attributes.

...

other possible options.

Value

• The results will cat or print on the STDOUT by default.

Details

These are useful functions for summarizing and debugging.

For ms, seqgen, and paml.baseml, it will show the result as standalone versions on the STDOUT out with line by line.

For other functions, they only show summaries of objects. Use names or str to explore the details.

References

Phylogenetic Clustering Website: http://thirteen-01.stat.iastate.edu/snoweye/phyclust/

See Also

ms, paml.baseml, phyclust, phyclust.Pt, RRand, seqgen.

Examples

# Functions applied by directly type the names of objects.