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goeveg R-package

Functions for Community Data and Ordinations

A collection of functions useful in (vegetation) community analyses and ordinations. The ordination functions work as add-on for functions from vegan-package.

Includes:

  • Automatic selection of species for ordination diagrams using limits for cover abundances and/or species fit (ordiselect() - function)
  • Species response curves (specresponse() - function)
  • Stress/scree plots for NMDS (dimcheckMDS() - function)
  • Rank-abundance curves (racurve() and racurves() - functions; the latter for (multiple) samples)
  • Calculation and sorting of synoptic tables with calculation of fidelity and differential species (syntable() and synsort() functions)

Furthermore some basic functions are included, such as standard error of the mean sem() and coefficient of variance cv().

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Install

install.packages('goeveg')

Monthly Downloads

1,008

Version

0.4.2

License

GPL (>= 2)

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Maintainer

Friedemann Goral

Last Published

November 22nd, 2018

Functions in goeveg (0.4.2)

ordiselect

Species selection for ordination plots
racurve

Rank-abundance curves
sem

Standard error of the mean (SEM)
cv

Coefficient of variation (CV)
schedenveg

Vegetation releves from Scheden
dimcheckMDS

Stress plot/Scree plot for NMDS
specresponse

Species response curves
schedenenv

Header data for Vegetation releves from Scheden
synsort

Sorting functions for synoptic tables
racurves

Multiple rank-abundance curves
syntable

Synoptic tables and calculation of fidelity and differential species character