CNEr (version 1.8.3)

readAxt: readAxt

Description

This function reads the axt files into a Axt object.

Usage

readAxt(axtFiles)

Arguments

axtFiles

character(n): file names of the axt files to read.

Value

A object Axt is returned.

Details

This function reads the axt files of two assemblies. It can be a single big axt file or several small axt files. Different from the start coordinate in axt file, the start coordinate in Axt object is 1-based.

See Also

Axt

Examples

  axtFilesHg19DanRer7 <- file.path(system.file("extdata", package="CNEr"), 
                                   "hg19.danRer7.net.axt")
  axtHg19DanRer7 <- readAxt(axtFilesHg19DanRer7)