readBpmap(filename, seqIndices = NULL, readProbeSeq = TRUE, readSeqInfo
= TRUE, readPMXY = TRUE, readMMXY = TRUE, readStartPos = TRUE,
readCenterPos = FALSE, readStrand = TRUE, readMatchScore = FALSE,
readProbeLength = FALSE, verbose = 0)
readBpmapHeader(filename)
readBpmapSeqinfo(filename, seqIndices = NULL, verbose = 0)NULL, the entire file is being read.readBpmap: A list of lists, one list for every sequence
read. The components of
the sequence lists, depends on the argument of the function call. For
readBpmapheader a list with two components version and
numSequences. For readBpmapSeqinfo a list of lists
containing the sequence info.
readBpmap reads a BPMAP file, which is a binary file containing
information about a given probe's location in a sequence.
Here sequence means some kind of reference sequence, typically a
chromosome or a scaffold. readBpmapHeader reads the header of
the BPMAP file, and readBpmapSeqinfo reads the sequence info of
the sequences (so this function is merely a convinience function).
tpmap2bpmap for information on how to write
Bpmap files.