Read Protein Sequences in PDB Format
readPDB(file = system.file("protseq/4HHB.pdb", package = "BioMedR"))The name of the file which the sequences in PDB format are
to be read from. If it does not contain an absolute or
relative path, the file name is relative to the current
working directory, getwd.
The default here is to read the 4HHB.PDB file which
is present in the protseq directory of the BioMedR package.
A character vector, representing the amino acid sequence of the single-letter code.
This function reads protein sequences in PDB (Protein Data Bank) format, and return the amino acid sequences represented by single-letter code.
Protein Data Bank Contents Guide: Atomic Coordinate Entry Format Description, Version 3.30. Accessed 2013-06-26. ftp://ftp.wwpdb.org/pub/pdb/doc/format_descriptions/Format_v33_Letter.pdf
See readFASTA for reading protein sequences
in FASTA format.
# NOT RUN {
Seq1atp = readPDB(system.file('protseq/1atp.pdb', package = 'BioMedR'))
Seq1atp
# }
Run the code above in your browser using DataLab